Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04043 ATGGAAGTTCTGTCTCTCTCTGTTACATTCACCAAATCTCAAACCTTTCCCTCTCTCAAACTAAATAAAACCCCAATTCACCAACTTCCAATAAACTCAACACaacccacaaaaaaaaatcactcttTTTCTTGTTCCATTTCATCTAATTCCTCTTTTACTAGAATTTCAGCAACAAGTAATCAATCATCAACTTCACAAACTGATATGTTGTTGTTCCCTGCTGGAAATTCAAAGCATTGGGTTGTTAGAATGGATAAACCTGTTGTTGGTGTTGTTACCAAAGCTCAAATTGTTGATCATTATGCTCAAATTTTGACTAAAGTTATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTTTCTTGGAAAACCAACTTTGGTTTTTGTTGTGAACTTGATGAGGATTGTGCAAATGACCTAGCTGGTGTGCCTGGTGTCTTGTCAGTTCAGCCAGATGACAATTTTGAGTCTGAAAATAAAGATTATGAAGGTAGAAACTTGGAAAATAGTTTGAATAAGGCAAATTCTTCTGAAGCAAGTCAGGAAGTTTCAGTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCCGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATCAtagataaaatttcaaaaaggtCCAAGGGTTATGCATTTATTGAATACACCACCGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTACTCCTCCAAGATACAATACAGGTCGAGCCAGACCATCTGCttga 852 0.3556 MEVLSLSVTFTKSQTFPSLKLNKTPIHQLPINSTQPTKKNHSFSCSISSNSSFTRISATSNQSSTSQTDMLLFPAGNSKHWVVRMDKPVVGVVTKAQIVDHYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCANDLAGVPGVLSVQPDDNFESENKDYEGRNLENSLNKANSSEASQEVSVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPRYNTGRARPSA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04043 283 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 47 282 - -
Tsu01g04043 283 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 47 282 IPR039206 GO:0016554
Tsu01g04043 283 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 57 159 IPR037045 -
Tsu01g04043 283 SMART rrm1_1 192 265 IPR000504 GO:0003723
Tsu01g04043 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 259 IPR000504 GO:0003723
Tsu01g04043 283 SUPERFAMILY RNA-binding domain, RBD 182 280 IPR035979 GO:0003676
Tsu01g04043 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Tsu01g04043 283 Gene3D - 160 283 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04043 Tsu-Chr1 48272540 48276144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04043 183 273 C2H2 Transcription Factor Family AT2G19380 31.868 4.20e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04043 - - mtr:MTR_1g092860 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04043 01 48272540 48276144 Tsu01g04043 01 48272540 48276144 ECH