Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04036 ATGTGTGCTGATACTTTGGTGGGAGATGAGATGAGACGGGGAATATCTGGCGGAGAAAAAAAGCGGTTAACTACTGGTGAGATGCTGGTAGGACCTGCAAAAGTTTTCTTAATGGATGAGATCTCGACCGGTCTAGATAGTTCTACAACCTTCCAAATAGTCAGGTTCTTGAGGCAGCTAGTTCATATCATGGATGTCACAATGATAATCTCTCTTTTACAACCTGCACCAGAGGCATTTGATCTTTTTGATGACATAATATTACTTTCAGAAGGTCAGATTGTTTACCAAGGTCCACGCAAAAATGTACTAGATTTTTTCGAGAGTGTAGGATTCAAATGTCCCGAAAGGAAAGGAGTTGCAGATTTCTTACAAGAGGTTACTTCTAGAAAGGATCAAGAACAGTACTGGTTCACAAGGGATAAACCTTACCATTATATCAGTGTTACTGAGTTTGTAACTCACTTCAAAAATTATGGAATTGGACAACAACTTTCTGAAGAGCTAGAGGTTCCTTATGACCGTGCGAAAACTCATCCTGCAGCATTGGTTAAGGATAAATATGGAATCACAAAACTAGAACTCTTCAAGGCATGCTTTGCAAGAGAGTGGCTACTGACAAAGCGAAGCGCTTTTATATACATATTTAAGACTAGTCAAATTACGATTATGTCTTTGATTGCTATGACAGTGTTTTTAAGAACAGAAATGAAATATGGTCAACTTGAAGATGGGAGAAAATTTTATGGTGCACTATTCTTCAGTTTGATTAATATAATGTTCAATGGAATGGCTGAACTTGCAATGACTATTTTTAGACTTCCTGTTTTCTTCAAGCAGAgagatttattattttatccTGCTTGGGCTTTTGCACTTCCAATATGGATCCTTAGGATCCCTCTCTCTTTTCTTGAGTCAGGATTATGGGTGGTTCTTACTTATTATACTATAGGGTTTGCTCCAGCTGCAAGCAGATTTTTTCGACAGTTTTTAGCATTCTTCTGCATTCATCAGATGGGTCTATCTCTATTCCGATTCATCGCTGCTCTTGGAAGAACACAAGTTGTGGCAAATACACTTGGTACCTTTATATTGCTACTTGTTTTCTTACTTGGTGGCTTCATTATAGCAAGAGATGACATTGAACCTTGGATGATATGGGGATATTATGCTTCTCCTATGATGTATGGTCAGAATGCTATTGCCATCAATGAGTTCCTTGATGAGAGATGGAGTACTCCAAATTTAGACCCAAGAGTTCCGGAACCTACAGTTGGGAAGGCTCTTCTCAAGGCCAGAAGCATGTTTACAGAAGATTATTGGTACTGGATTTGTGTTGGTGCTCTCTTAGGATTTTCACtacttttcaacattttttttattgtcgcCCTAACGTTTTTGAATCCATTTGGTGATTCTAAATCCATTGTTATGGAGGAGGAAAACAAGAAAAAGGAAACAACAAAAGAGACTTCTGTTTCAAAAGCTAAATCATTTGAAAACATTGAAATGGCAGAAAGAAATACCTCAGAGCGTCCAATTCTCAATGCAACAACCAAGAGGGGAATGGTGTTACCCTTTAGGCCACTATCGCTTGCTTTCAATCACGTGAATTACTACATCAATATGCCAGCCGAAATCAAAACACAAGGATTTGAAGAGAGTCGGCTCCAATTACTAAGAGATGTAAGTGGTGCTTTCAGGCCTGGAGTACTAACAGCATTAGTAGGTGTAACTGGTGCTGGAAAAACCACACTGATGGATGTTCTTGCTGGAAGAAAAACTGGTGGTTATATTGAAGGAAGCATTAGTATATCTGGTTATCCAAAGAACCAAGCAACATTTGCTCGAATAAGTGGATACTGTGAACAGAATGATATCCACTCTCCAAATCTTACGGTCTATGAATCTATTGTTTTTTCAGCTTGGCTACGTCTCGGTAAGGAGGTCAATGGAGAAACACAGAAGATGTTTGTTGAGgaagttatgaaacttgttgAGCTACATCCAGTGAGGAATTTTTTAGTAGGCCTTCCTGGAATAGATGGTTTATCAACAGAACAAAGAAAGCGATTAACCATTGCTGTAGAATTGGTTGCCAATCCTTCTATCATTTTTATGGATGAGCCTACATCAGGCCTTGATGCTAGAGCTGCAGCAATTGTTATGCGTACTGTCAGAAATACAGCGAATACAGGGAGAACTGTGGTCTGCACAATTCACCAACCAAGCATTGAtatatttgaatcttttgatgAGCTGCTTTTGATGAAGAGAGGAGGACAAATAATATACAGCGGTCCCCTTGGTCAACAATCTCAGAAGCTTGTCAAGTACTTTGAGGCTATTTCAGGAATTCCTAAAATCAAAGATGGATATAATCCTGCCACATGGATGTTGGAGATCAGTTCTCCAACAGTTGAGTCTCAGCTTAGTGTAGATTTTGCAGAACTGTATATTAAGTCAGAATTGTATCAGACGAATCAAGAACTTATTAAAGAGTTAAGCACACCATTACCAGGAACAAAAGATCTTAATTTCGCTACTAAACACTCCCGGTCCTTTATTACTCAATGCAAAGCTTGCTTCTGGAAACAGCAATGGTCCTACTGGCGGAATCCCCAATATAATGCCATACGGTTCTTCTTGTCGGTATCTGTAGGTGTTATTTTTGGACTCATTTTCTGGAAAAAAGGAGATAAACTACACAAGGAACAAGATCTTATGAATTTAACGGGAGCTATGTATTCAGCTATTTTATTTCTTGGAGCCACCAACACTTCTGCAGTTCAACCTGTAGTAGCAGTAGAAAGAACAGTCTTCTACCGTGAAAGAGCAGCCGGAATGTATTCAGCTCTCCCTTATACAATTGCTCAGGTAGCAATAGAATGTATATACGTTGCAATCCAAACACTTGCCTATACCCTTATCCTTTACTCAATGATGGGGTTCCCTTGGCAAGCTGACAAGTTCATCTGGTTCTACTACTTCATATTCATGTCCTTCGTCTACTTCACACTTTATGGGATGATGACTGTGGCTCTGACACCAAACCATCAAATTGCTGCAATTGTTATGTCTTTCTTTCTAGTGTTCTGGAACATATTCTCGGGTTTCGTTATCCCCAAATCGCAAATTCCGATATGGTGGAGATGGTATTATTGGGCGTGCCCAACTGCATGGACTGTATATGGTCTAGTGACCTCACAGTTGGGTGATAATGAGACTCTAATTGAGGTACCTGGAGCTGGAACTATATCTGTAAAATCATACCTCAATGAACAAATGGGCTTTGAATATGACTTCCTTGGAGTTGTTGCTGTGGCTcatattgtttttgttgttgtgtttcttTTTGTATTTGCTTACGGCATAAAAGTCCTTAATTTCCAGAAGAGGTAA 3405 0.3833 MCADTLVGDEMRRGISGGEKKRLTTGEMLVGPAKVFLMDEISTGLDSSTTFQIVRFLRQLVHIMDVTMIISLLQPAPEAFDLFDDIILLSEGQIVYQGPRKNVLDFFESVGFKCPERKGVADFLQEVTSRKDQEQYWFTRDKPYHYISVTEFVTHFKNYGIGQQLSEELEVPYDRAKTHPAALVKDKYGITKLELFKACFAREWLLTKRSAFIYIFKTSQITIMSLIAMTVFLRTEMKYGQLEDGRKFYGALFFSLINIMFNGMAELAMTIFRLPVFFKQRDLLFYPAWAFALPIWILRIPLSFLESGLWVVLTYYTIGFAPAASRFFRQFLAFFCIHQMGLSLFRFIAALGRTQVVANTLGTFILLLVFLLGGFIIARDDIEPWMIWGYYASPMMYGQNAIAINEFLDERWSTPNLDPRVPEPTVGKALLKARSMFTEDYWYWICVGALLGFSLLFNIFFIVALTFLNPFGDSKSIVMEEENKKKETTKETSVSKAKSFENIEMAERNTSERPILNATTKRGMVLPFRPLSLAFNHVNYYINMPAEIKTQGFEESRLQLLRDVSGAFRPGVLTALVGVTGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNLTVYESIVFSAWLRLGKEVNGETQKMFVEEVMKLVELHPVRNFLVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTANTGRTVVCTIHQPSIDIFESFDELLLMKRGGQIIYSGPLGQQSQKLVKYFEAISGIPKIKDGYNPATWMLEISSPTVESQLSVDFAELYIKSELYQTNQELIKELSTPLPGTKDLNFATKHSRSFITQCKACFWKQQWSYWRNPQYNAIRFFLSVSVGVIFGLIFWKKGDKLHKEQDLMNLTGAMYSAILFLGATNTSAVQPVVAVERTVFYRERAAGMYSALPYTIAQVAIECIYVAIQTLAYTLILYSMMGFPWQADKFIWFYYFIFMSFVYFTLYGMMTVALTPNHQIAAIVMSFFLVFWNIFSGFVIPKSQIPIWWRWYYWACPTAWTVYGLVTSQLGDNETLIEVPGAGTISVKSYLNEQMGFEYDFLGVVAVAHIVFVVVFLFVFAYGIKVLNFQKR 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04036 1134 CDD ABCG_PDR_domain2 530 768 IPR034003 -
Tsu01g04036 1134 SMART AAA_5 570 762 IPR003593 -
Tsu01g04036 1134 Pfam ABC-2 type transporter 74 125 IPR043926 GO:0140359
Tsu01g04036 1134 Pfam ABC-2 type transporter 742 818 IPR043926 GO:0140359
Tsu01g04036 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 772 IPR027417 -
Tsu01g04036 1134 Gene3D - 3 151 IPR027417 -
Tsu01g04036 1134 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 1134 - -
Tsu01g04036 1134 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 1 1134 - -
Tsu01g04036 1134 Pfam Plant PDR ABC transporter associated 422 478 IPR013581 -
Tsu01g04036 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 127 IPR027417 -
Tsu01g04036 1134 Gene3D - 547 784 IPR027417 -
Tsu01g04036 1134 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 533 786 IPR003439 GO:0005524
Tsu01g04036 1134 Pfam ABC transporter 561 713 IPR003439 GO:0005524
Tsu01g04036 1134 Pfam ABC-2 type transporter 858 1071 IPR013525 GO:0016020|GO:0140359
Tsu01g04036 1134 Pfam ABC-2 type transporter 195 407 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04036 Tsu-Chr1 48156978 48163621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04036 558 745 Calmodulin-binding Proteins AT2G36910 28.000 4.88e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04036 K08711 - gmx:100786666 1880.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04036 01 48156978 48163621 Tsu01g04036 01 48156978 48163621 ECH