Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04026 ATGATTTCATCTGGAATCAACTTGGTTATGACTATAATTGGTTTTGCTGTTAGCACAATGTTCATTGTTTTTGTATGCACAAGACTCATTTGTGCTCGAATTCACTTGAATGCTTCTAGAAGATCTTTTCTCATTGCTTCTAGATCCAATCTCAGCTTGATGGAGAGAGGTTGTCAAGGTCTTGAACGCATTGATGTAGCTAAATTTCCAGTTAAGAAGTACAGCGACAAGTTTTTTGCTGCTGGAGAAAATTCTCAATGCACAGTCTGTCTCTCAGAGTACCAAGGTGAAGATACACTGCGTATCCTCCCCCATTGTGGACACTCCTTCCATATGGCCTGCATAGACTTATGGCTGCAGCAGAATGCCACTTGTCCTGTTTGTCGAATATCATTGCGTGAATTTTCCGAGAGAACACGATCAATGCAACCTGTATATAGCTCCCATTATGGGATGGAGTCATTTGACACTCATCATTATCACTGTATCATGGCCGAAAATGGATTATCGACAAGAACCTCTGATAACCGTGGGGTTAACCCTATACAAGAGGATCACTTTCCATCTGAGGGTGGTGGAGCAGTTGACATGGACAGCATCACCTCCTTAAGTCAGGGTGATTTCATtaaagatgaagagaagaagcaTGTAGAGAGCCCATCAAATTTATAG 672 0.4062 MISSGINLVMTIIGFAVSTMFIVFVCTRLICARIHLNASRRSFLIASRSNLSLMERGCQGLERIDVAKFPVKKYSDKFFAAGENSQCTVCLSEYQGEDTLRILPHCGHSFHMACIDLWLQQNATCPVCRISLREFSERTRSMQPVYSSHYGMESFDTHHYHCIMAENGLSTRTSDNRGVNPIQEDHFPSEGGGAVDMDSITSLSQGDFIKDEEKKHVESPSNL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04026 223 Pfam Ring finger domain 86 129 IPR001841 -
Tsu01g04026 223 SMART ring_2 87 128 IPR001841 -
Tsu01g04026 223 CDD RING-H2_PA-TM-RING 86 129 - -
Tsu01g04026 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 134 IPR013083 -
Tsu01g04026 223 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Tsu01g04026 223 PANTHER OS11G0150450 PROTEIN 1 222 - -
Tsu01g04026 223 PANTHER OS11G0150450 PROTEIN 1 222 - -
Tsu01g04026 223 SUPERFAMILY RING/U-box 81 135 - -
Tsu01g04026 223 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04026 Tsu-Chr1 48075998 48078512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04026 13 132 C3H Transcription Factor Family AT4G10150 37.097 1.19e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04026 - - aprc:113873018 394.815