Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04023 ATGAACACTGACCCATATGGTTTACCAGAAGATCTCCGCCGtttaatatcatcatcatcaagaaACCTACCTTCATCAGAACCACCATATCAATATggtggttcttcttcttcttttcctcCACCACAGCAAAATTACTGCTATGACCCTTCTTCTATCATTGTTGGTGATGTTTTCTACCCTCGTAATAGTAACAACACTTTCCCTCACTATGGTTATTCTTCTACTGTTAACCCTACTACAAATATTTCTTCTTCTGCTATAACAGCTAATTCTTCAGATCATGCTACTGCTTCTGCTTCACCATTTTGTGTTGGTTTAGAAACTTCTATAGATAATAATAAAGGTTGGTTTGGTAATTTTGATTCTTGTAACAATAGATGGCCAAGACAAGAAACTCTTTCACTTCTTGAAATCAGATCTCGTCTTGATTCTAAGTTCAGAGAGAATAATCAGAAAGCACCCTTATGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAAAAGTTTGAGAATTTGTACAAGTATTACAAGAAAACCAAAGAAGGTAAAGCTAGTAGACAAGATGGTAAACACTATAGATTCTTTAGACAGCTTGAAGCAATATGTGGAGAAGCCTCAACTTCAGACAAAACTACACCTCATGCTGATGCTGTTGTTGCTACTCAAACTCCAAACTTCATTGTGAACCAAGAAAATATTAATGGTGTAAATGATCATAATTTGATCAATAACCTCAAGTACTCAGAGAGTCTAAGTTTCTCGAATTCATCTGAATTCGAGACATCTTCATCTGAAAACAACGACGAGGATCTCTCGGCCATTGCACACACGATGAAGTCGTCGAAGCAGAAAGGGGTGGACAAGAGTGATAGGAGGGGGAGGAAAAGTTGGAGAGGTAAAGTGGAGGAGATTGTTGATTCTCACATGAAGAAGATTATAGAGACTCAAGATGCTTGGATGGAAAGAATGTTAAGTGTTGTTGAACAAAGAGAACAAGAAATGGcattaaaagaagaagaaaggaagaGAAAAGAATCAATGAGATTTGATCAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCTTGGGTTGAAGCAAGAGATTCAGCATTGTTAGAAGTTGTAAGAAAACATATTGGTGTTGAAACATCAAGTAAGAATGAAAGTAATATAAATTATGAATACCCTTTTGGAAATGTTGATCATGGATGGACAGAAATGGAGATATCAAGTTTGATACAACTAAGGACAAGTTTTGAACATCAAGTAAGAGAAAAAGGGTATTTGGATGATTGTGTTTGGGAAGAAATAGGTGAAAAAATGGTGTATATGGGATTTAATAGGAATGGTGTTGAGTGTAAGAAAATATGGGATGAGATTAGTATGTCTCTAAGAAGGTCAGTGGATTGTGGAGTCAAAATTACAAGACCTTGGTGTTTGGGACTTAAGGTGACAGATGATGACGACCTTTGA 1509 0.3479 MNTDPYGLPEDLRRLISSSSRNLPSSEPPYQYGGSSSSFPPPQQNYCYDPSSIIVGDVFYPRNSNNTFPHYGYSSTVNPTTNISSSAITANSSDHATASASPFCVGLETSIDNNKGWFGNFDSCNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEASTSDKTTPHADAVVATQTPNFIVNQENINGVNDHNLINNLKYSESLSFSNSSEFETSSSENNDEDLSAIAHTMKSSKQKGVDKSDRRGRKSWRGKVEEIVDSHMKKIIETQDAWMERMLSVVEQREQEMALKEEERKRKESMRFDQEIHELWAKEKAWVEARDSALLEVVRKHIGVETSSKNESNINYEYPFGNVDHGWTEMEISSLIQLRTSFEHQVREKGYLDDCVWEEIGEKMVYMGFNRNGVECKKIWDEISMSLRRSVDCGVKITRPWCLGLKVTDDDDL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04023 502 MobiDBLite consensus disorder prediction 15 38 - -
Tsu01g04023 502 Coils Coil 332 359 - -
Tsu01g04023 502 MobiDBLite consensus disorder prediction 289 311 - -
Tsu01g04023 502 CDD GT1 126 192 - -
Tsu01g04023 502 ProSiteProfiles Myb-like domain profile. 126 185 IPR001005 -
Tsu01g04023 502 ProSiteProfiles Myb-like domain profile. 416 473 IPR001005 -
Tsu01g04023 502 Gene3D - 128 190 - -
Tsu01g04023 502 Gene3D - 416 478 - -
Tsu01g04023 502 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 55 482 - -
Tsu01g04023 502 MobiDBLite consensus disorder prediction 1 38 - -
Tsu01g04023 502 PANTHER - 55 482 - -
Tsu01g04023 502 Pfam Myb/SANT-like DNA-binding domain 415 480 IPR044822 -
Tsu01g04023 502 Pfam Myb/SANT-like DNA-binding domain 126 213 IPR044822 -
Tsu01g04023 502 MobiDBLite consensus disorder prediction 293 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04023 Tsu-Chr1 48057755 48060503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04023 127 488 Trihelix Transcription Factor Family AT5G03680 41.565 3.32e-86 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu01g04023 Myb_DNA-bind_4 4.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04023 - - gmx:100787750 526.168