Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04019 ATGGATACATTTGAAGGTGTGCATTATGGTATTGTAAGCCAAATGAATTTCATTTGGCAACAAGCTAGAGTACCCCTTATTGTTCCAATGCtgaaaattttagtttttttgtgtttggctATGTCAATTATGCTTTTTGTGGAGAGAGTTTATATGGGTATAGTCATTGTCTTTCTTAAGTTGTTTGGTCATAAACCAGAGAAACATTACAAATGGGAGCCACTTAAGGATCATGACATTGAGCTTGGAAATTCTGCTTTTCCTATGGTTTTGGTGCAAATCCCAATGTATAATGAAAAagagGTGTATCAATTATCAATTGGAGCTGCATGTGGCTTATCATGGCCATCTGATAGAATTATTATTCAAGTTCTTGATGATTCAACAGATCCAATCATTAAGAATCTGGTGGAGGTGGAATGTGAGAGATGGAGAAGGAAAGgcataaacataaaatatgaGATAAGAGAAAACAGACATGGATACAAAGCTGGTGCTCTTAAAGAAGGAATGAAGCATAGCTATGTCAAACTTTGTGACTATGTTGCCATCTTTGATGCTGATTTTCAACCCGAGTCTAACTACCTTTACCGTACCATCCCATTTCTTGATCAAAATCCACAAGTTGGTCTAGTTCAAGCTCGATGGAAATTCGTTAATGCTGATGAATGCTTAATGACAAGAATGCAAGAGATGTCATTGGATTATCATTTCCTTGTTGAACAAGAAGTTGGATCCTCAACTCATGCTTTTTTTGGTTTCAATGGCACAGCTGGTGTTTGGAGAATTTCAGCACTAAATGAAGCCGGTGGATGGAAGGATCGCACGACGGTGGAAGATATGGACTTGGCGGTACGAGCTAGTCTCAAAGGGTGGAAATTTGTTTACCTTAGTGACCTCAAGgtGAAAAGTGAATTGCCAAGTACTTTCAAAGCCTACCGTTATCAGCAACACCGATGGTCATGTGGTCCAGCAAATCTTTTCAGGAAAATGGCTATGGAAATCTTAAGAAACAAGAGAGTCACAATATGGAAGAAATTTTATGTGatatatagttttttctttGTCCGGAAAATCATAGCCCATGTTGTCACATTTACATTCTACTGTGTCATTTTGCCTGCAACTGTTTTAGTTCCAGAAGTAGAAGTCCCTAAATGGGGTGCTGTTTATATACCTTCCATCATTACACTTCTTAATGCTGTTGGAACTCCAAGGTCATTTCACTTATTGGTATTGTGGatactttttgaaaatgttatgtCAATGCATAGGACTAAGGCAACAATTATAGGTTTGTTTGAGGCAGGTAGAGTAAATGAATGGGTAGTTACTGAGAAATTAGGTGATGCTCTCAAAACAAAATCGGGCGGTAAAGCAGCTAAAAAACCTCGTATCAGGATCGATGGAAGGCTTCATTTCCTAGAACTTGGTGTTGGAGCTTACCTCTTTTTATGTGGATGTTATGATCTTGCTTTTGGGAAGAATCACTACTTCATATATCTTTTTCTGCAAGCTTTTGCCTTCTTTGTTGTGGGAGTTGGCTATGTTGGCATCTATGTTCCTAGTTCTTAG 1575 0.367 MDTFEGVHYGIVSQMNFIWQQARVPLIVPMLKILVFLCLAMSIMLFVERVYMGIVIVFLKLFGHKPEKHYKWEPLKDHDIELGNSAFPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPIIKNLVEVECERWRRKGINIKYEIRENRHGYKAGALKEGMKHSYVKLCDYVAIFDADFQPESNYLYRTIPFLDQNPQVGLVQARWKFVNADECLMTRMQEMSLDYHFLVEQEVGSSTHAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFVYLSDLKVKSELPSTFKAYRYQQHRWSCGPANLFRKMAMEILRNKRVTIWKKFYVIYSFFFVRKIIAHVVTFTFYCVILPATVLVPEVEVPKWGAVYIPSIITLLNAVGTPRSFHLLVLWILFENVMSMHRTKATIIGLFEAGRVNEWVVTEKLGDALKTKSGGKAAKKPRIRIDGRLHFLELGVGAYLFLCGCYDLAFGKNHYFIYLFLQAFAFFVVGVGYVGIYVPSS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04019 524 PANTHER - 2 523 - -
Tsu01g04019 524 SUPERFAMILY Nucleotide-diphospho-sugar transferases 86 366 IPR029044 -
Tsu01g04019 524 PANTHER BNAC09G36340D PROTEIN 2 523 - -
Tsu01g04019 524 Pfam Glycosyl transferase family group 2 181 373 IPR001173 -
Tsu01g04019 524 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 80 307 IPR029044 -
Tsu01g04019 524 CDD CESA_CaSu_A2 88 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04019 Tsu-Chr1 47979465 47982514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04019 2 523 Miscellaneous Gene Families AT5G03760 76.482 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04019 K13680 - gmx:100797453 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03973 07 45796907 45803877 Tsu01g04019 01 47979465 47982514 ECH
Tsu01g02271 01 23981787 23997072 Tsu01g04019 01 47979465 47982514 ECH
Tsu01g04019 01 47979465 47982514 Tsu01g04019 01 47979465 47982514 ECH