Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04016 ATGATCAAATCAGTTGGTGACACACACAAAGAACGTTCGGTAATCTCCAATTCAACACAACAAaccctctctttctctctcaaccCTCGCCGGAGTTGCACCTCCTCCGCCATCACCGGCATGGACTTGCCGAAACACCGTCCCACACCAACTACCTCTTTAAGGGACGCATCAGACTCTTCCACTGGTAGCTGGGACGCTCTCGAATGGACCAAAATTGAGCCAATTGCGCGTTTCGTTTCTCCTGCGAATCTAGATTTCTTGCTCGATGACGAACAAGTTGTTGCCGAAGGACATGGCGTTGTTCTTGTCAATACAGATGATGCAGGTGTCTTGATTGTAACAAACTTTCGTCTAATATTTTTGAGTGAGGGAACAAGAAAAGTTATTGCCCTTGGAACAATACCACTAGCAACTATTGAGAAGTTTAACAAGACAGCTGTAAAGGTTCAGTCAAATACTAATCAATCAGACAAGACACCAACACAAAGACTGCTGCAGGTGATTGGGAAGGATATGAGAATTATAGTCTTTGGTTTTAGGCCTCGTACAAAACAGAGACGTGCAATATATGATGCACTACTGAAGTGTACGAAGCCAACAATATTATGGGATCTTTATGCTTTTACATCTGGGCCTTCCAGTTTCAAGAACACCTCTCCATTGGTGCGTTTATTGGATGAGTATTTTCGACTTATTGGCAAAGCGTCTCATCGTGCTTCAATGAACATGATTGAAAGTGGGTCCTTCACCTTGTCAAATGACTTATGGAGAATAAGTGGTGTGAATTCTAGTTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGAGCATTAGTGATGATGAAGTACTCCAGGCTTGCAAATTCCGGGCAAGATGCCGACTGCCTGTAATTTCTTGGTGTCATCCTGTTACTGGCGCAGTTCTTGCACGTTCTTCCCAACCTTTAGTTGGTCTCATGATGAATATGAGGAGCAACATGGACGAAAAACTTGTGGCTGCACTTTGCAGCAACCGTGATGGCTCAAGGAGAAAGCTATATATCGCTGATGCAAGACCAAGGAAAAACGCATTAGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGATAATCTTTTTTGGTATAGACAACATTCATGCAATGAGAGAGAGCTTTGTTCGGCTCCGAGAATTCATGGACACTCATGGCAGAACATCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGGATCAATATGGGGTGGCGGCAATTTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACAGTGGATGGTTATTGCATGTTCAGAATGTCTTAGCTGGTGCAGCTTGGATTGCTGCACGTGTTGCTATGGAAAAGGCTTCTGTTCTTGTACATTGCAGTGATGGATGGGATAGGACAAGCCAGTTAGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCAAAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTAGCATTTGGTCATCCATTTTCTGATCGTGTGGGAACACCATCTATCTCTGGAAGTGGCAACATGTCTTTCGAGTTACCTAGGCAGTCTTCAAATAACATCATCCCATCATCACCAATGCGCCAGCCATCAGGGACATTCGTGTCTCAACCTCCAGTTTCATCTCATGCACATAACGCAAACAACTACTCTCCCATTTTTTTGCAGTGGGCTGATTGTGTGTCACAACTGCTGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGTATGTGTCCttgaatatttattatatttctctatttgttttattgtaaaaCTTTCTTTCTCACTGGTAACTTGTACTATTGCATTAATAAGGCTTTCCTGGTGGACTTCTTAG 1914 0.419 MIKSVGDTHKERSVISNSTQQTLSFSLNPRRSCTSSAITGMDLPKHRPTPTTSLRDASDSSTGSWDALEWTKIEPIARFVSPANLDFLLDDEQVVAEGHGVVLVNTDDAGVLIVTNFRLIFLSEGTRKVIALGTIPLATIEKFNKTAVKVQSNTNQSDKTPTQRLLQVIGKDMRIIVFGFRPRTKQRRAIYDALLKCTKPTILWDLYAFTSGPSSFKNTSPLVRLLDEYFRLIGKASHRASMNMIESGSFTLSNDLWRISGVNSSYTMCQSYPFALVVPKSISDDEVLQACKFRARCRLPVISWCHPVTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSNRDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIIFFGIDNIHAMRESFVRLREFMDTHGRTSSDGMSSFLRHGGSIWGGGNLSSMSASVSTLGDSGWLLHVQNVLAGAAWIAARVAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFKGFQALVEKDWLAFGHPFSDRVGTPSISGSGNMSFELPRQSSNNIIPSSPMRQPSGTFVSQPPVSSHAHNANNYSPIFLQWADCVSQLLRMYPFAFEFSAVCVLEYLLYFSICFIVKLSFSLVTCTIALIRLSWWTS 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04016 637 CDD PTP-MTM-like 297 587 - -
Tsu01g04016 637 MobiDBLite consensus disorder prediction 1 62 - -
Tsu01g04016 637 ProSitePatterns Tyrosine specific protein phosphatases active site. 473 483 IPR016130 GO:0016311|GO:0016791
Tsu01g04016 637 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 54 608 - -
Tsu01g04016 637 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 250 610 IPR029021 -
Tsu01g04016 637 Pfam Myotubularin-like phosphatase domain 207 601 IPR010569 -
Tsu01g04016 637 PANTHER MYOTUBULARIN-RELATED 54 608 IPR030564 -
Tsu01g04016 637 MobiDBLite consensus disorder prediction 11 39 - -
Tsu01g04016 637 Gene3D - 99 198 IPR011993 -
Tsu01g04016 637 SUPERFAMILY PH domain-like 88 210 - -
Tsu01g04016 637 SMART gram2001c 77 147 IPR004182 -
Tsu01g04016 637 ProSiteProfiles Myotubularin phosphatase domain. 237 599 IPR010569 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04016 41 607 Protein tyrosine phosphatase (PTP) family AT3G10550 72.396 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04016 K18081 - gmx:100781842 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04016 01 47949512 47959244 Tsu01g04016 01 47949512 47959244 ECH