LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g04011	ATGGATTATGTTAGCAATGCAATGCTCCTTTTGTTGACATGCATTGTCACATACTTCATTGGCTCACTTTATGCAAGAAGCAGAAAATCAAGCTACAAGCTTCCACCAGGACCTTCCATTTTTACTATTATGTCACATGTTTTTGAATTATACTATAAGCCACAACAAACACTTGCTAAATTTGCTAAGTTTTATGGTCCTGTTATGCTTATTAAATTATGCACAGAGACCACTGTGATTATTTCATCATCAGAAATGGCCAAAGAAATTCTTCATACTAATGATTCTTTGTTCACTGATAGATCTGTTCCTGATAACACAACTACTCATAATCACAACAATTTTAGTATTGTCTTTCTCCCATTTTCACCTCTTTGGCAACACCTTAGAAAAATATGCCATAATAGTTTATTCTCTAATAAGACTCTTGATGGAAGTCAAGAACTTAGGCGTATGAAATTGAAAGATCTTCTTAACGATATGCATAAAAGCAGCTTAACTGGTGAAGCTGTTGATGTTGGAAGAGCTGCTTTTAAGGCTTGCAttaattttttgtcatataCTTTTGTGTCACAAGATTTTGTTGAGTCATTGGATGATGAATATAAGGATATAGTTTCCACTCTTTTGAGTGCTATTCTTGACCCACAAGGCATTAAAAGGCACACTactaaatatgttgcaaaagtGTTCTATGCCTTAGATATCATAATTGACAAACGAATGAAGCTAAGACAAAGTGAAGATTATGTCTCAAAGAATGACATGTTAGACACcttgttggacatttctaaaGAAGATAGCCAAAAGATGGATAAAAAACAGATTAAACATCTATTACTTGATTTACTTGTGGCGGGAACAGAAACATCAGCATATGGATTAGAAAGGGCAATGACTCGACTAGTACACGATCCAAAGGCTATGTCAAAAGCAAAAAAGGAACTTGAGAAAACTATTGGAATTGGGAATCCTATTGAGGAATCCGACATTGATAGACTTCCATACTTACAAGCAGTAATAAAAGAGAGCTTGCGTTTACACCCTCCAGCTCCAATGTTGCTTCCTCGAAAAGCAAGAGTAGATGTAGAAATATCAGGGTACACAATTCCAAAAGGTGCCCAAGTTCTGATCAATGAATGGGCTATTGGTAGAACAAATATATGGGATGATGCCGATTTGTTTTCACCTAAAAGATTTTTAGGATCTGAAATTGATGTCAAAGGTCGACACTTTAAACTTACACCGTTCGGTAGTGGAAGGCGTATATGTCCCGGATCACCACTTGCTGTTAGGATGTTACATTTGATGTTGGGGTCATTAATCAATTCATTTAATTGGAAACTTGAAAATAATATGGAGCCTAAGGACATGAACTTGGACAAACCTCTAAGAGCTATTCCAATTCCAGTTGTTCTAAACAACATTAAGTAA	1434	0.3466	MDYVSNAMLLLLTCIVTYFIGSLYARSRKSSYKLPPGPSIFTIMSHVFELYYKPQQTLAKFAKFYGPVMLIKLCTETTVIISSSEMAKEILHTNDSLFTDRSVPDNTTTHNHNNFSIVFLPFSPLWQHLRKICHNSLFSNKTLDGSQELRRMKLKDLLNDMHKSSLTGEAVDVGRAAFKACINFLSYTFVSQDFVESLDDEYKDIVSTLLSAILDPQGIKRHTTKYVAKVFYALDIIIDKRMKLRQSEDYVSKNDMLDTLLDISKEDSQKMDKKQIKHLLLDLLVAGTETSAYGLERAMTRLVHDPKAMSKAKKELEKTIGIGNPIEESDIDRLPYLQAVIKESLRLHPPAPMLLPRKARVDVEISGYTIPKGAQVLINEWAIGRTNIWDDADLFSPKRFLGSEIDVKGRHFKLTPFGSGRRICPGSPLAVRMLHLMLGSLINSFNWKLENNMEPKDMNLDKPLRAIPIPVVLNNIK	477

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g04011	477	PANTHER	CYTOCHROME P450 FAMILY PROTEIN	1	471	-	-
	Tsu01g04011	477	PRINTS	E-class P450 group I signature	275	292	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g04011	477	PRINTS	E-class P450 group I signature	414	424	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g04011	477	PRINTS	E-class P450 group I signature	295	321	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g04011	477	PRINTS	E-class P450 group I signature	378	402	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g04011	477	PRINTS	E-class P450 group I signature	62	81	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g04011	477	PRINTS	E-class P450 group I signature	338	356	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g04011	477	PRINTS	E-class P450 group I signature	424	447	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g04011	477	SUPERFAMILY	Cytochrome P450	35	460	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g04011	477	Gene3D	Cytochrome P450	22	464	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g04011	Tsu-Chr1	47867965	47869958	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g04011	1	462	Cytochrome P450	AT2G45550	39.344	2.78e-123	367

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g04011	-		-	gmx:100800810	634.795

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