Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04009 ATGGATTATGTTAGTATTGCAATGATCCTTTTGGTGACATGCATTGTCACTTACTTTCTTGGTTCACTTCATGCAAGAACcagaaaatcaaattacaagCTTCCACCAGGACCTTCCATTTTCACTATCATGTCACATGTTTTTGATATATACTATAAGCCACAACAAACACTTGCTAAATTTGCTAAGTTTTATGGTCCtattatgcttattaagttgtGCACTGAGACCACTGTCATTATTTCATCATCAGATATGGCCAAAGAAATTCTTCATACTAATGATTCTTTGTTCACTGATAGATCTGTTCCTGATAACGCAACTACTCATAATCACGACAATTTTAGCGTAGTGTTTCTCCCATTTTCACCTCTTTGGCAACACCTTAGAAAAATATGTCACAATAATTTATTCTCTAATAAGACTCTTGATGCAAGTCGAGAACTTAGACGTATGAAATTAAAAGATCTTCTTAATGATATGCATAAAAGCAGCTTAACTGGTGAAGCTGTTGATATTGGAAGAGCTGCTTTTAAGACTTGCAttaattttttgtcatataCTTTTGTGTCTCAAGATTTTGTTGAGTCATTGGATGATGAATATAAGGATATAGTTTCCACTCTCTTGAGTGCTATTGGAACACCAAACATTGCAGATCATTTCCCTATATTGAAGATTCTTGACCCACAAGGTATTAGAAGGCACACTGATAAGTATTTTGCAAAAGTGTTCTATGTCTTTGATATCATAATTGACAAACGGATGAAGCTAAGACAAAGTGAAGATTATGTCTCAAAGAATGACATGTTAGACACATTGTTGAACATTTCCAAAGAAGATAGCCAAAAGATGGATAAAAATCTGATTAAACATCTATTATTTGATCTGCTTGTGGCGGGAACAGATACTTCAGCGTTTGGATTAGAAAGGGCAATGACTCGTCTAGTACACGATCTAGAGGCTATGTCAAAAGCAAAAAAGGAACTTGAGGAAACTAGTGGATTAGGAAATCCAATTGAGGAATCCGACATTGACAGGCTTCCATACTTACGAGCAGTGGTAAAAGAGAGTCTGCGTTTACACCCTCCAGCTCCAATGTTGCTTCCTCGAAAAGCAAGAGTAGATGTGGAAATATCAGGGTACACAATTCCAAAAGGTGCACAAGTTTTGATCAATGAATGGGCTATTGGTAGAGCAGACATATGGGATGATGCTGATTTGTTTTCCCCTGAAAGATTTTTAGGATCTGAAATTGATGTCAAAGGTCGACACTTTAAACTAACACCGTTTGGTAGTGGAAGACGTATATGTCCCGGCTCACCACTTGCTGTTAGAATGTTACATTTGATGTTGGGGTCATTGATCAATTCATTTGATTGGAAACTTGAAAATAATATGGAAGCAAAGGATATGAACTTGGACAAACCCCTAAGAGCTATTCCCGTTGCACTAAACAAAGTGGATTAA 1470 0.3565 MDYVSIAMILLVTCIVTYFLGSLHARTRKSNYKLPPGPSIFTIMSHVFDIYYKPQQTLAKFAKFYGPIMLIKLCTETTVIISSSDMAKEILHTNDSLFTDRSVPDNATTHNHDNFSVVFLPFSPLWQHLRKICHNNLFSNKTLDASRELRRMKLKDLLNDMHKSSLTGEAVDIGRAAFKTCINFLSYTFVSQDFVESLDDEYKDIVSTLLSAIGTPNIADHFPILKILDPQGIRRHTDKYFAKVFYVFDIIIDKRMKLRQSEDYVSKNDMLDTLLNISKEDSQKMDKNLIKHLLFDLLVAGTDTSAFGLERAMTRLVHDLEAMSKAKKELEETSGLGNPIEESDIDRLPYLRAVVKESLRLHPPAPMLLPRKARVDVEISGYTIPKGAQVLINEWAIGRADIWDDADLFSPERFLGSEIDVKGRHFKLTPFGSGRRICPGSPLAVRMLHLMLGSLINSFDWKLENNMEAKDMNLDKPLRAIPVALNKVD 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04009 489 SUPERFAMILY Cytochrome P450 28 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 486 - -
Tsu01g04009 489 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1 486 - -
Tsu01g04009 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Tsu01g04009 489 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 Coils Coil 313 333 - -
Tsu01g04009 489 Gene3D Cytochrome P450 22 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04009 489 Pfam Cytochrome P450 35 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04009 Tsu-Chr1 47823169 47825221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04009 1 476 Cytochrome P450 AT2G45550 41.598 9.86e-132 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04009 - - gmx:100800810 649.432