Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04006 ATGGTTTTGATTGATGAAAAGGTCATTGATGTTCTTCATCATGGAAGAGCAATTGTTTCCAAGGTTGAGCTAAAGGAGAAGCTGGATAATGATGTTAAGGACCCAAACGCCGTCTTCATTTTCAAGTTCATAACTCATTTTGGTGGTGGCAAGTCTACAGGATTTGGTTTGATCTATGATTCTGTGGAGAATGCTAAGAAATATGAACCAAAATACAAACTTATCAGGGGAAATGATTTGGCGAAGGCATCTGCTGCTGGTTTAGGCAAGAAGGAAGTGAAGTATGCTCGAAGGTTACTCATTGTGGGATTGTTTGAAGAGTTGCTACTCTAG 333 0.3964 MVLIDEKVIDVLHHGRAIVSKVELKEKLDNDVKDPNAVFIFKFITHFGGGKSTGFGLIYDSVENAKKYEPKYKLIRGNDLAKASAAGLGKKEVKYARRLLIVGLFEELLL 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04006 110 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 78 IPR012678 GO:0003735|GO:0005840|GO:0006412
Tsu01g04006 110 Pfam Ribosomal protein S24e 8 78 IPR001976 GO:0003735|GO:0005840|GO:0006412
Tsu01g04006 110 PANTHER 40S RIBOSOMAL PROTEIN S24 7 82 - -
Tsu01g04006 110 ProSitePatterns Ribosomal protein S24e signature. 47 69 IPR018098 -
Tsu01g04006 110 Gene3D - 5 98 - -
Tsu01g04006 110 PANTHER 40S RIBOSOMAL PROTEIN S24 7 82 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04006 Tsu-Chr1 47770194 47771672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04006 8 76 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 77.465 8.90e-35 114