Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03988 ATGGCACTTGAATCATGTGAAGGTGGAGAACTTTTTGATCAAATTACCAGGAAGGGTCGTTTACCTGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTTGAATACATACATGGTTTGGGAGTTATACATCGTGATATTAAGCCAGAGAACCTATTACTTACATCTGAAGGACACATTAAAATAGCTGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAGTTACTGTCCTTCCGAATGCAGCATCAGATGACAAAGCCTGCACATTTGTGGGAACAGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCCTCTCCCGCAACTTTTGGAAATGATCTCTGGGCACTTGGCTGCACATTATATCAAATGCTTTCTGGAACTTCCCCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAGAGAATTATAGCAAGAGAAATTCGATTTCCAGATTACTTTTCAGACGAAGCAAGAGACCTTATTGACAGGCTCTTGGATTTAGACCCCAGCAGGAGACCAGGTGCAGGACCTGATGGTTATGCTATTTTGAAAGTACATCCATTTTTCAAGGGTGTTGACTGGAATAACTTAAGGGCACAAACTCCTCCAAAACTTGCTCTGGAACCCGGGactcAATCGCCTGCTGATGAGTCATCATGGAGTCCTTCTCACATTGGTGACGGTTCTGCTAGACAGCCTGATGGTGCCACATCGTCTGCAGATGGAACTGGTCACATAACCAGGCTAGCTTCAATTGATTCCTTTGACTCAAAATGGCAACAATTTTTGGAGCCTGGTGAATCTGTTCTTATGATCTCCATGGTGAAGAAATTGCAAAAACTATCAAGCAAGAAGGTGCAGCTCATCCTTACCAACAAACCAAAGTTGATCTATGTCGACCCTTCAAAATTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAACATTCAAGTGACTAGTCCCTCACATTTCAAGATTTGCACACCGAAAAAGGTAATGTCGTTTGAGGATGCTAAGCAAAGAGCGTCTCAGTGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA 1095 0.4201 MALESCEGGELFDQITRKGRLPEDEARFYAAEVVDALEYIHGLGVIHRDIKPENLLLTSEGHIKIADFGSVKPMQDSQVTVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPSRRPGAGPDGYAILKVHPFFKGVDWNNLRAQTPPKLALEPGTQSPADESSWSPSHIGDGSARQPDGATSSADGTGHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLSSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSHFKICTPKKVMSFEDAKQRASQWKKAIEGLQNR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03988 364 SUPERFAMILY PH domain-like 187 363 - -
Tsu01g03988 364 MobiDBLite consensus disorder prediction 207 247 - -
Tsu01g03988 364 Gene3D Transferase(Phosphotransferase) domain 1 10 206 - -
Tsu01g03988 364 SUPERFAMILY Protein kinase-like (PK-like) 1 224 IPR011009 -
Tsu01g03988 364 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 360 - -
Tsu01g03988 364 Gene3D - 242 364 IPR011993 -
Tsu01g03988 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Tsu01g03988 364 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 1 360 - -
Tsu01g03988 364 MobiDBLite consensus disorder prediction 216 247 - -
Tsu01g03988 364 Pfam Protein kinase domain 1 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03988 364 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03988 364 SMART serkin_6 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03988 364 Pfam PH domain 261 363 IPR033931 -
Tsu01g03988 364 Coils Coil 344 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03988 Tsu-Chr1 47455419 47462074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03988 1 364 AGC Kinase Gene Family AT3G10540 83.379 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Tsu01g03988 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03988 K06276 - gmx:100788780 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03988 01 47455419 47462074 Tsu01g03988 01 47455419 47462074 ECH