Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03979 ATGGAAGAGACTCACGACAACGACGCTCTTCCAAATAACAAACCTTCCACCGAACAGgatATTACTGATGAGTTAGAACTAAGATCAAAGAAGTATCGTAGAGGAGAAGGTGCTAATGTGAAGggtttaaaggataaaaaactCAGGAGTCAGATGCTTGCTAGAGAGAAATTATATGGAGAAACTGCAATAGTTGCTGCTAAGACTGAGAAATGGATTATGCCTAGCGAGGCGGGTTATATCGAGCCTGAAGGCATAGAAAAGACTGACACGATCAAGCAGGATGCAATAGCCCGTGAAGTAGATATCGCAAGCTTAAGGAACCAATATGATATTACTTTACCAGAGTTTGGTCCATATACTCTAGACTTTACTTCAAGTGGCCGGTATATGGCTCTTGGCGGTCGTAAGGGCCACCTAGCAATTGTGGACATGATGAATCTGAGCCTGATTAGAGATTTTCAGGTAAGAGAAACTGTGCGTGATGTTGTATTCTTACATAATGAGCTCTTCTTTGCTGCTGCCCAGAAAAAGTATCTGTACATCTATAGTCGTGAAGGCACAGAGCTTCACTGCCTAAAGgAACATGGTTCAGTGTTGAAGCTTCAATTTCTGAAAAACCATTTTCTGTTGGCTTCTACCAACAATTATGGGATGCTTCTTTATCAGGATGTTACAATGGGTGCCATAGTTGGGAAATATCGAACTGGTTTAGGACGTACAAATGTGATGCAAGTAAACCCTTACAATGCAGTTGTTTCTTTAGGTCACTCGGCCGGTACAGTTACTATGTGGAAGCCAACCAGTTCTTCCCCCCTTGTCAAGATGCTATGTCATCAAGGGCCAGTCTCGGCACTGGCATTTCACTCAAATGGCCACATAATGGCCACTGCTGGggtagataaaaaaattaagcttTGGGATTTGAGGAAGTATGAGGCTTTCCAAACATTACCAGGCTATGCAAATACTTTGGAGTTTAGTCAGAAAGGCTTCCTTGCTTGTGGTACTAATTCATATCTCCAGGTTCTGAGAGATGTTTCTGGTGCGCAGAACTATTCAAGGTACATGACTCATTCAATGGCAAAGGGTTACCAGATAGGGAAATTAGCTTTTCGGCCATACGAAGATGTTCTATGTATAGGGCATTCAATGGGATATTCTAGTATTATTATTCCAGGAGCAGGAGAACCCAACTTTGATTCATGGGTTGCAAACCCATTTGAAACACCTAAACAGAGAAGCGAAAAGGAAATAAAGGCTCTTCTTGATAAACTTCCACCTGAGACAATCATGCTGGATCCCAGCAAGATCGGTACAGTGAAAGATACTAAAAAAGAGAAGCTAACTGCGCaagagagagaggaagagatGGAAGCCGCCATTGAAGCTGTCAAGAgcaaaaaactgaaaaagaaaacaaaaggaagAAGTAAGGCAGGTAAAATAATGCCGAAAAAGCAAGATGCAATTGCCAATGCAAAGAGGCCTTTCTTGGAGCAGAAAATTCAAGAAGAGAAAAACATATCTAGAAAGAAACAGAAAACTAATGAGGGAGTTGAGCTACCAAGATCTTTACAGAGGTTTGCTCATAGGAAACCATCATCGTAA 1611 0.3966 MEETHDNDALPNNKPSTEQDITDELELRSKKYRRGEGANVKGLKDKKLRSQMLAREKLYGETAIVAAKTEKWIMPSEAGYIEPEGIEKTDTIKQDAIAREVDIASLRNQYDITLPEFGPYTLDFTSSGRYMALGGRKGHLAIVDMMNLSLIRDFQVRETVRDVVFLHNELFFAAAQKKYLYIYSREGTELHCLKEHGSVLKLQFLKNHFLLASTNNYGMLLYQDVTMGAIVGKYRTGLGRTNVMQVNPYNAVVSLGHSAGTVTMWKPTSSSPLVKMLCHQGPVSALAFHSNGHIMATAGVDKKIKLWDLRKYEAFQTLPGYANTLEFSQKGFLACGTNSYLQVLRDVSGAQNYSRYMTHSMAKGYQIGKLAFRPYEDVLCIGHSMGYSSIIIPGAGEPNFDSWVANPFETPKQRSEKEIKALLDKLPPETIMLDPSKIGTVKDTKKEKLTAQEREEEMEAAIEAVKSKKLKKKTKGRSKAGKIMPKKQDAIANAKRPFLEQKIQEEKNISRKKQKTNEGVELPRSLQRFAHRKPSS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03979 536 PANTHER WD-REPEAT PROTEIN BING4 10 532 IPR040315 -
Tsu01g03979 536 MobiDBLite consensus disorder prediction 1 30 - -
Tsu01g03979 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Tsu01g03979 536 MobiDBLite consensus disorder prediction 470 536 - -
Tsu01g03979 536 Gene3D - 102 390 IPR015943 GO:0005515
Tsu01g03979 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Tsu01g03979 536 PANTHER BNAANNG36350D PROTEIN 10 532 - -
Tsu01g03979 536 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Tsu01g03979 536 Coils Coil 441 471 - -
Tsu01g03979 536 MobiDBLite consensus disorder prediction 499 519 - -
Tsu01g03979 536 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Tsu01g03979 536 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Tsu01g03979 536 SMART WD40_4 147 184 IPR001680 GO:0005515
Tsu01g03979 536 SMART WD40_4 186 223 IPR001680 GO:0005515
Tsu01g03979 536 SMART WD40_4 105 144 IPR001680 GO:0005515
Tsu01g03979 536 SMART WD40_4 269 308 IPR001680 GO:0005515
Tsu01g03979 536 SUPERFAMILY WD40 repeat-like 108 384 IPR036322 GO:0005515
Tsu01g03979 536 SMART BING4CT_2 355 435 IPR012952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03979 Tsu-Chr1 47375712 47380737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03979 118 331 U-box Gene Family AT1G04510 24.454 1.22e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03979 K14768 - gmx:100802940 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03979 01 47375712 47380737 Tsu01g03979 01 47375712 47380737 ECH