Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03977 ATGAACTACAACTTCATCCGACCAGACTTGATTGTTGGATCATGCTTGCagACTCCTGAAGATGTTGATAAGCTGCGTAAAATTGGAGTGAAAACTATATTTTGCTTGCAACAAAATCCAGACCTAGAATATTTTGGAGTTGACATCAATGCCATACGAGAATATGCCAAGACATTCGATGACATCAAACACCTGCGTGCTGAAATAAGGGACTTTGATTCATTTGATTTACGGAAGCGGCTTCCAGCTGTAATTAGCAAATTACACAAGGCAATCAAATCCAACGGGGGTGTGACATATATACACTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGtTGGCTTATATGTTTTGGGTTCTTGGTTATAAACTCAATGATGCTAATGCACTACTTCTGAGCAAAAGGTCGTGCTTTCCGAAACTAGATGCCATAAAAAGTGCAACAGCCGATATTCTTACAGGCCTCAGTAAGAAACCTGTCACTTTGTCATGGGGACACAACAATTGCTCTACGGTGGAAATTTCGGGACTTGATATTGGATGGGGGCAGAGAGTGCCCTTAGATTTTGACGACAAACGGGGTTCATGGTTTCTCGAGAAGGAAATGTTTGAAGGGCGCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAACGATGAGCGTGTAACATCTCCCAACAAAGACGGTCATGTCAACAATTTTATCGAAGTTATTGATGATGCGGACGGTGACCGTGCCTCTCTTCGGGATAGAGTGACTGGTCATGATCCTGATCTCACAAAGGATGAACGAACCAAAATAATAGAGTTTCTGGAAGCTTTTCCCGATGAGGATCTCTGA 855 0.4292 MNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQNPDLEYFGVDINAIREYAKTFDDIKHLRAEIRDFDSFDLRKRLPAVISKLHKAIKSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNDANALLLSKRSCFPKLDAIKSATADILTGLSKKPVTLSWGHNNCSTVEISGLDIGWGQRVPLDFDDKRGSWFLEKEMFEGRYEYKYIVDGEWTCNNDERVTSPNKDGHVNNFIEVIDDADGDRASLRDRVTGHDPDLTKDERTKIIEFLEAFPDEDL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03977 284 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 282 - -
Tsu01g03977 284 Pfam Dual specificity phosphatase, catalytic domain 45 140 IPR000340 GO:0008138|GO:0016311
Tsu01g03977 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 79 137 IPR000387 GO:0016311|GO:0016791
Tsu01g03977 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 2 159 IPR020422 GO:0006470|GO:0008138
Tsu01g03977 284 Pfam Glycogen recognition site of AMP-activated protein kinase 161 244 IPR032640 -
Tsu01g03977 284 CDD DSP_laforin-like 1 148 IPR045204 GO:0019203|GO:0046838
Tsu01g03977 284 SMART dsp_5 2 152 IPR020422 GO:0006470|GO:0008138
Tsu01g03977 284 Gene3D Immunoglobulins 157 247 IPR013783 -
Tsu01g03977 284 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 282 IPR030079 GO:0005982|GO:0007623|GO:0019203
Tsu01g03977 284 CDD E_set_AMPKbeta_like_N 161 242 - -
Tsu01g03977 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 144 IPR029021 -
Tsu01g03977 284 Gene3D Protein tyrosine phosphatase superfamily 1 275 IPR029021 -
Tsu01g03977 284 SUPERFAMILY E set domains 160 243 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03977 Tsu-Chr1 47355796 47362319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03977 1 284 Protein tyrosine phosphatase (PTP) family AT3G52180 66.197 1.43e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03977 - - mtr:MTR_1g090867 535.028