Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03972 ATGGTCACGCATATCGAGAAACGTGTGAATTTGAACTCAAAAAATATTGTAGCCCAATTGCAATCAGAAATTCAGTACTCAACTGAACTGTTGCATCCAATGAAATCTTCATCAACAAATTTAGCAAGATTGTTGAGTTCATCACTTGATTCTACTAACATCTCTTTCTCTGATATTGAAACCAAGgTTGCTCCATTATTATTTCAAGCATTTGAGACAGTTCCTCACTTAACTCAAATCTCATACATAGGAATGGAAGGTCTCTTTTTCTCATATTGTAGTGATCGTGATCAAACTCTAGCGATGTTCTCTAATTCATCGTCAAATAAACCCTTATACTATGTCCAGCGTGTGAATAATGAAACCGGAGAGGTTTTTGGAGACGCCATAATATCAAACTCCTCTATCAACACAAGTTGGATTAAGGAAGCAGCTAATCTTTCAAATGAATTTGCGTCATTAGGAACCAAGTGGAGCAATGACCACGATCTTTTGTTCCTCAGTTCTGCTAGAATCAACCGAATTGGAGTGATCTCTCTAGGATTTACAGCACAATCAATAACTGATTATGTTACTCGTGTTGATCGTCTAGGCACGAGGTCATATTTAGCTACCAAAGATGGACAAATTCTCGTGGAAGGGATTCAACATATCCGTTTCGTTGTTTTTAACGATTCAGTTTCGTTCCAATCAGTGAATGCAAATGGAGATGTGATAAAGAATGAGGGGACTGTCTCATGCAAGAATGAAGCTATTGCTTCTAATTTGAATATTCAAGATAATAAATATCTAATCCACTGCTACCTCATTGATATAATGGGAATAGAATCAGTGTATGTTTTGGCTGTACCAAGAAATGGATTTGATGTAAGTTATAAGAAAATGGGATTGGCTCTATTGAATGTAATGATGGTAATGATACTTGTTGCTGTCTTTGGCTTTCTATTTATAGATGGTAGAGCTATAAGAAGAGAAATGCATTTGTGTGCCTCACTCATAAAACAAAAAGAGGCCACACAACAAGCtgagaaaaaaaacatgaaCAAGAGCCTAGCAGTTGCTAGTGCTAGCCACGACGTTCGCACTTCTCTCGCAGGCATTACTGCTCTCATAAAAATTTCGTCTAAGTTAGTTCCCTCTGGTTCAGAATTGGCATCAAATTTAATCCAAATGGAGGATTGTACACAAGATTTACTAGGACTATTGAACTCTATACTTGACACAAGCAAAATTGAGGTAGGAAAAATGGAACTGAAGGAAGAAGAATTTGATTTATCTCATTTTCTGGAAGAAGTGGTAGATATATACTATCTTGTGGCCATGGAGAAAGGTGTAGAACTTGTATTGGACCCTTGTAATGGTTCTGTTATAAAATATTCGCGCGTGAAAGGCGATAGAGGAAGACTTAAACAAGTTTTGTGTAATTTACTGAACAATGCTGTCAAATTTACAAATGAAGGTCACATAGCAGTTCGAGCTTGGGCCCAGAAGCCGACATTAAGTAGTTCAATAATCAAGACTAACCAACATAGTTTCATGAAACATTTGTCACacttatttttgaagaaaaaaaatgaagcatATGAGGAGGACGTAGAGAAAACGATGAATACGATTCAACAAGATCATCCGCGTTCTATGGATTTCGTGTTTGAAGTGGATGATACAGGAAAAGGAATTCCGAAAGAGAATTACAAATCCGTGTTTGAGAATTATGTTCAAGTTAAAGAAACTGATCCTGTCCAAGAAGGAACAGGCTTAGGACTTGGAATTGTGCAGTCTTTGGTACGTTTGATGCATGGAGATATTGAAATTGTGGACAAGAACATTGGTGAAAAAGGAACATGTTTCAGGTTCAATGTTCAACTCAGTTTATGTGAAGGAGAAACAGTGACAGATTTTAGTGCAAGGGGAGGTCTTGAGTATGGAACAAGTAGCAGAAATCAAGCTCAAGGGAGAACCATTCATTCTACTATTTCTAATTCAAACATTTGTTCCATGAGTCCCATGTTACATATTTTCAACTCTAGTCCTAGACTCGAGTCTTCACGTGTTGTTCTTTTCATCGGAAACAAGGAGCGTCGAAAGACTTGTAAAAGGTTCATGAAGAGCTTAGGGATTAAAGTTAAGGTTGTGAATAGTCGAGAAGATTTGTTTGATACTCTAGAGGGGATCAAACAAAAGGGTCACCGTTCCAGTGGCCCGAGTTCACCAGAATCTTCTTCCAATTTGAGTTCTTCTCATTCCGCATCTCATAATTCATTTTCAAGAACCAGAGGTGTTCCTTTGAGTTCTATGGATGGAAACGAGTATACATCTCCGGTTTTCAAGAAGACGAATGTTGGAACTGTCCCAGGATTCGTCTTGATTGTCATAGATGCAAATGCAGGACCATCATTTCCTAAACTTTTCGGAATTGTATCCAACTTCAAGAAAGGCTTTTCCAACCATTGTAACATTGTTTGGTTGGATAATCCACATTTGCATCGTATCGATTCCAAAATAATTGATCAAAATGACATTGTCATATTGAAGCCGTTTCATGGTAGTCGTTTGTTCCAAGTCATAATGCTTCTTCCTGAGTATAGTAATGGTAGTTCTTGGCAAAGCATTAAGAAACCGCATGTTAGAAAATCTCCGGTTCGTCGAGGAGAAATACAAGAATGTGGAGACTCAAGCTGTTACAACAATTCCTTGCATTCCAAGAAATTTTTGGTTGTTGACGATACTAAAATTTTGCGAATGCTAGCTACAAATATATTGGTTTCGCTCGGTGCAACTGTCGAACAATGTGAGAATGGAGAAGAGGCTGTGAGGCTAGTTGATGAAGGACTAAAAAGAGATTATCCTAATCTTCCTTATGATTACATCTTAATGGACTGTCAGATGCCGGTGATGAATGGATTTGAGGCAACAAAGCAGATACGAGAGATGGAGAAGTCGTACGGTGTTCACATTCCTATCATTGCGTTAACCGCAGATGTTGATAGCTCGACGGCAGTGACTGGAATGGACTTTCATATAGAAAAGCCTCTTAGAAAAGAACATTTACTTGAAGCCGTTAGATACTTCAACAGTAAAGAGTGA 3087 0.3758 MVTHIEKRVNLNSKNIVAQLQSEIQYSTELLHPMKSSSTNLARLLSSSLDSTNISFSDIETKVAPLLFQAFETVPHLTQISYIGMEGLFFSYCSDRDQTLAMFSNSSSNKPLYYVQRVNNETGEVFGDAIISNSSINTSWIKEAANLSNEFASLGTKWSNDHDLLFLSSARINRIGVISLGFTAQSITDYVTRVDRLGTRSYLATKDGQILVEGIQHIRFVVFNDSVSFQSVNANGDVIKNEGTVSCKNEAIASNLNIQDNKYLIHCYLIDIMGIESVYVLAVPRNGFDVSYKKMGLALLNVMMVMILVAVFGFLFIDGRAIRREMHLCASLIKQKEATQQAEKKNMNKSLAVASASHDVRTSLAGITALIKISSKLVPSGSELASNLIQMEDCTQDLLGLLNSILDTSKIEVGKMELKEEEFDLSHFLEEVVDIYYLVAMEKGVELVLDPCNGSVIKYSRVKGDRGRLKQVLCNLLNNAVKFTNEGHIAVRAWAQKPTLSSSIIKTNQHSFMKHLSHLFLKKKNEAYEEDVEKTMNTIQQDHPRSMDFVFEVDDTGKGIPKENYKSVFENYVQVKETDPVQEGTGLGLGIVQSLVRLMHGDIEIVDKNIGEKGTCFRFNVQLSLCEGETVTDFSARGGLEYGTSSRNQAQGRTIHSTISNSNICSMSPMLHIFNSSPRLESSRVVLFIGNKERRKTCKRFMKSLGIKVKVVNSREDLFDTLEGIKQKGHRSSGPSSPESSSNLSSSHSASHNSFSRTRGVPLSSMDGNEYTSPVFKKTNVGTVPGFVLIVIDANAGPSFPKLFGIVSNFKKGFSNHCNIVWLDNPHLHRIDSKIIDQNDIVILKPFHGSRLFQVIMLLPEYSNGSSWQSIKKPHVRKSPVRRGEIQECGDSSCYNNSLHSKKFLVVDDTKILRMLATNILVSLGATVEQCENGEEAVRLVDEGLKRDYPNLPYDYILMDCQMPVMNGFEATKQIREMEKSYGVHIPIIALTADVDSSTAVTGMDFHIEKPLRKEHLLEAVRYFNSKE 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03972 1028 MobiDBLite consensus disorder prediction 724 765 - -
Tsu01g03972 1028 SUPERFAMILY CheY-like 901 1024 IPR011006 -
Tsu01g03972 1028 MobiDBLite consensus disorder prediction 730 765 - -
Tsu01g03972 1028 PANTHER HISTIDINE KINASE CKI1-LIKE 4 1022 - -
Tsu01g03972 1028 Pfam Response regulator receiver domain 905 1021 IPR001789 GO:0000160
Tsu01g03972 1028 PANTHER TWO-COMPONENT HISTIDINE KINASE 4 1022 - -
Tsu01g03972 1028 SMART HKATPase_4 464 625 IPR003594 -
Tsu01g03972 1028 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 464 623 IPR003594 -
Tsu01g03972 1028 PRINTS Bacterial sensor protein C-terminal signature 567 577 IPR004358 GO:0016310|GO:0016772
Tsu01g03972 1028 PRINTS Bacterial sensor protein C-terminal signature 549 563 IPR004358 GO:0016310|GO:0016772
Tsu01g03972 1028 PRINTS Bacterial sensor protein C-terminal signature 583 601 IPR004358 GO:0016310|GO:0016772
Tsu01g03972 1028 SMART HisKA_10 348 414 IPR003661 GO:0000155|GO:0007165
Tsu01g03972 1028 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 403 621 IPR036890 -
Tsu01g03972 1028 CDD REC_hyHK_CKI1_RcsC-like 904 1021 - -
Tsu01g03972 1028 ProSiteProfiles Response regulatory domain profile. 903 1025 IPR001789 GO:0000160
Tsu01g03972 1028 SMART REC_2 902 1021 IPR001789 GO:0000160
Tsu01g03972 1028 CDD HisKA 346 410 IPR003661 GO:0000155|GO:0007165
Tsu01g03972 1028 Gene3D - 319 412 - -
Tsu01g03972 1028 ProSiteProfiles Histidine kinase domain profile. 355 625 IPR005467 -
Tsu01g03972 1028 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 336 416 IPR036097 GO:0000155|GO:0007165
Tsu01g03972 1028 Gene3D - 887 1026 - -
Tsu01g03972 1028 Gene3D - 413 628 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03972 Tsu-Chr1 47315918 47319905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03972 7 1027 Histidine Kinase Gene Family AT2G47430 38.689 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g03972 HATPase_c 3.9e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03972 - - cam:101504256 1565.82