Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03967 ATGACAGATTTTGAACCTCTACAGCAGAAACCTGAATCTGCTGATACCGCCCATGCTGAGTTTGACCATGGATTGGAGGACTATATGCGAGGTCATTTGGATGATTGTATGTCATTTGCTTCGTGTAGCTCTTCTCGGGTGCAggatgatgatgacgatgagAGTGATCAGCTTGTTCGGAGGAGACGGAGGTCTGATCTTGAAGGGGATGATTTAGCGGAGTCATCAGCAGCGCGGAGGCGCCATTCGCGAATTTTGAGCAGATGGGCTGCTAGGCAGGCACAGGAGATGATAACTACTATTGAAAGGAGGAATAGAGAGTCAGAGTTGATGGCGCTTGCAGGGTTACATACGGTGTCTATGTTGGATTCCTCTTTTTTGAGGGGGTCGCAGTCTCCTACTTCTGGTCAGGAGGGGGCTGTGGAGAGACCGAGCACTCAGGCATCTTCTATTCTGCAGATGTGGCGAGAATTGGAGGATGAACATTTGTTGAATCGGGCACGTGAAAGGATGAGGGAAAGGTTGAGACGGCAGAGGAGTTCCTCTGATGCTAATACCAATGTGTCAAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCGAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACCTGGTCACATGATCAAATTGGATCACGTAATGCACGTGTGAATCATAATGGATCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTCGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCGTTCATCTAATGTGAGCCAGAGAAATAACAACCACAGATCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTGAGAATTGTCAGGGAATGGGTGCAAATGACTAGTCAACAAAGAGGTTCACGTGGGAGCCGTAGGGATGCTCAAGTAAGTGAATCTGCTCAAGCTGATCGGACCCGTGATATGGCTGCTGACCATGATGAGCGTCAGCCAGAGCATGTGCGGCGGGACATGTTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTTGAGAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAACTGTTGAAGATGAGAGGCCTCCTTCTACAGCAGCAAGTGAATTAGTTCAATTAAGACAACGACACAGTGTCTCCGGTATAAGGGAGGGGTTTCGCTCAAGATTAGAAACTATTGTTCGTGGTCAAGCAAGCACCAATCCTGATGCCACATCAAATAGTAGCAATGATGAAACAAGACAAGATGAAAGCCAATCAAACAATCTCATAGATGACCAACAAGAAAGTTATGATCAAGAGCAGATTAGGAGCCAGGAAGCTGATGTACGTCAGTTGCCTAATCAAACAGGAACTTTGGAGAGTAGCACAAGTGAGACTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGGATTGGCAAGAACAGATCGCTGCAAATGAGGGAGGAAACTGGCCGCAGAGAGTTAATGGTTCATTCAATCAGCTCAGAGATGGAATGGAAGCCAGTGATTGGCCACAGGAAACTCCCAGAAATTCAGCTGGGGAAGATCCTGATCCTCAGGAGGCTCAGAGAATTTGGCAGGACGATAACACAAGGGAAGCCGTTGGTAATTGGTCTGAAGGACCTTCTGCAGCTTCAAGGAATCGCCGTGGTGTTCCTTTTAGAAGATTTAATAGATTTCATCCTCCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTCAGCAGGAGAAGTGTATCTAACCTTCTGCGCAGTGGTTTCCGTGAAAGTCTGGATCAACTAATTCAGTCATATGTTGAAAGGCAAGGTCATGCACCAATTGACTGGGATTTGCATCGAAACTTGCCTACAACGACTCCTGCCTCACCTGAACGAGACCCTGATCAGCAGGGTGATGAGCCTAATGAGGGTCAGCGTGAAGCCATCAACAGACCTTCACTGGTGTTGCCTTCGCCACCAGTGCCCCCGCCACAACCACTGTGGCACCAAGATTTGCACCAAACTGGATGGTCTCGTCATACCATGCATCGCTCTGAAATTGAATGGGAGATCATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAAGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTAAACAAAGGAACTTGCTGTGTTTGTTGTGATAACCACATTGATTCACTTTTGTACAGATGTGGACATATGTGCACATGTTCAAAATGTGCTAATGAGTTAATTCGTGGAGGAGGTAAGTGTCCGTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATATTgtaa 2562 0.4649 MTDFEPLQQKPESADTAHAEFDHGLEDYMRGHLDDCMSFASCSSSRVQDDDDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASSILQMWRELEDEHLLNRARERMRERLRRQRSSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNARVNHNGSSREQSPDLGEVERERVRQIVRGWMESGISDRSSNVSQRNNNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSESAQADRTRDMAADHDERQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHSVSGIREGFRSRLETIVRGQASTNPDATSNSSNDETRQDESQSNNLIDDQQESYDQEQIRSQEADVRQLPNQTGTLESSTSETISWQEASNQGGDWQEQIAANEGGNWPQRVNGSFNQLRDGMEASDWPQETPRNSAGEDPDPQEAQRIWQDDNTREAVGNWSEGPSAASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGHAPIDWDLHRNLPTTTPASPERDPDQQGDEPNEGQREAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVNKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03967 853 MobiDBLite consensus disorder prediction 315 337 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 126 148 - -
Tsu01g03967 853 CDD mRING-HC-C3HC5_NEU1 800 840 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 181 239 - -
Tsu01g03967 853 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 853 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 42 79 - -
Tsu01g03967 853 Pfam Zinc finger, C3HC4 type (RING finger) 798 845 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 298 337 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 542 563 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 434 470 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 481 512 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 298 314 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 434 512 - -
Tsu01g03967 853 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 853 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 654 683 - -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 172 246 - -
Tsu01g03967 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 851 IPR013083 -
Tsu01g03967 853 MobiDBLite consensus disorder prediction 53 79 - -
Tsu01g03967 853 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Tsu01g03967 853 Coils Coil 730 750 - -
Tsu01g03967 853 SUPERFAMILY RING/U-box 800 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03967 Tsu-Chr1 47244318 47250547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03967 783 847 C3H Transcription Factor Family AT3G06140 37.879 1.31e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03967 - - gmx:100805607 1379.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03967 01 47244318 47250547 Tsu01g03967 01 47244318 47250547 ECH