Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03965 ATGCCTAGAAGAAAGGTAAAACTTGCTTTTATCTCTGATGAATTGGCAAGGAAGGTAACCTACAACAAAAGAAAGAAGGGTCTCATTAAGAAGGTAACAGAACTCACAACTCTTTGTGATGTTCCTGCTTGTGCCATAATTTCCagtccttttgattctgaaaCAGAGGTTTGGCCAAATCAAGAGGGAGCCATGAAGGTAATTGAGAGGTATCAAAATTCATATATGCGAGACGAAAAGAGGAATGTGAACCAAGAGAAATTCATCATGCAGATGATTACCAAAGCTAGGGACCAGATAAGAAAGATGAAACAAGATAATCGCGAGAAAGAGCTTAATCTTCTTATGTTTGCTTGCTTGCAAAACAACAATCTCTCAATTGACTTAACTGCTGAAGAACTGAAAGATTTTGATAAGCTTGTTGAGAAGAAGTTGAAGGAGGTTGGTAGTAAGATTGAGACACTTAATTGA 471 0.3609 MPRRKVKLAFISDELARKVTYNKRKKGLIKKVTELTTLCDVPACAIISSPFDSETEVWPNQEGAMKVIERYQNSYMRDEKRNVNQEKFIMQMITKARDQIRKMKQDNREKELNLLMFACLQNNNLSIDLTAEELKDFDKLVEKKLKEVGSKIETLN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03965 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tsu01g03965 156 Coils Coil 93 113 - -
Tsu01g03965 156 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Tsu01g03965 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu01g03965 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu01g03965 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu01g03965 156 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Tsu01g03965 156 CDD MADS_SRF_like 3 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu01g03965 156 PANTHER MADS BOX PROTEIN 3 154 - -
Tsu01g03965 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu01g03965 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 154 - -
Tsu01g03965 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03965 Tsu-Chr1 47228805 47229275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03965 3 155 Type I MADS-box Gene Family AT1G65300 39.610 2.01e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g03965 SRF-TF 4.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03965 - - gmx:100792290 176.407