Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03960 atgCATAATTATTACCCCATGGCTTTCCCCATCCTTTTCCTTCTCTTCATTTCCCTTCCATTTTCTTCAGCCAAACTCAACATAAATTACTACAAAACAACATGTcctgattttgaaaaaattgttagAGAAAACATTTACACAAAACAAAGTGCAAGTCCGGCAACCGCACCGGGCCTCCTTCGTCTTTTTTTCCACGATTGTATCACCGACGGTTGTGATGCTTCCCTACTCATTTCTTCGACCGCATACAACCCTCACGCCGAGCGTGACGCTGATCTTAACCTTTCCCTCTCCGGAGATGCATTCGATATTATTGTCAAGATAAAAAATGCATTAGAACTTGCATGTCCCGGCATTGTTTCGTGTTCCGATATTATTGCACAATCAACTAGAGATCTTGTTAAGATGGTTGGTGGTCCATATTATCCAGTGAGGTTAGGAAGAAAAGATAGTCTTGTTTCAGATGCTTCAAGAACTGATAAAGCTCttccaacaacaaaaatgaCAATGGATGGTATTATTGAAAAATTTACAGCAAAAAATTTCACTATTAGAGAAATGGTTGCATTAACTGGTGCACATACAATTGGTTTCACACATTGCAAAGAATTCAGCAATAGAATTTTCAACTTTAGCAAAACTTCTGAGATTGATCCAACACTTCATCCAAAATTAGCTAAAGGTTTAAGAGAAGTTTGTAAGAATTATACTCATGACCCAACAATGGCTGCTTTTAATGATGTGAGGTCACCAGGGAAATTTGATAATGCATATTATCAAAATGTGTTGAAGGGTTTAGGATTATTAACAACTGATTATATTCTAGGTGTTGATCCAAGAACAAGGTCACTTGTGGAATTATATGCAAAAGATGAACAAGCATTTTTTCAAGATTTTGCTAAGGCAATGGAGAAGCTTTCTGTGTTTGAAGTGAAGACTGGTAAAAAAGGTGAAGTGAGGAGCAGGTGTGATCAATTCAATCATATTCCTAATTAA 999 0.3564 MHNYYPMAFPILFLLFISLPFSSAKLNINYYKTTCPDFEKIVRENIYTKQSASPATAPGLLRLFFHDCITDGCDASLLISSTAYNPHAERDADLNLSLSGDAFDIIVKIKNALELACPGIVSCSDIIAQSTRDLVKMVGGPYYPVRLGRKDSLVSDASRTDKALPTTKMTMDGIIEKFTAKNFTIREMVALTGAHTIGFTHCKEFSNRIFNFSKTSEIDPTLHPKLAKGLREVCKNYTHDPTMAAFNDVRSPGKFDNAYYQNVLKGLGLLTTDYILGVDPRTRSLVELYAKDEQAFFQDFAKAMEKLSVFEVKTGKKGEVRSRCDQFNHIPN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03960 332 CDD secretory_peroxidase 25 327 IPR033905 GO:0004601|GO:0042744
Tsu01g03960 332 PANTHER - 10 330 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 SUPERFAMILY Heme-dependent peroxidases 26 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 Pfam Peroxidase 49 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Tsu01g03960 332 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Tsu01g03960 332 ProSiteProfiles Plant heme peroxidase family profile. 25 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g03960 332 PANTHER PEROXIDASE 41 10 330 - -
Tsu01g03960 332 Gene3D Peroxidase, domain 2 165 307 - -
Tsu01g03960 332 Gene3D - 29 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03960 Tsu-Chr1 47178648 47179874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03960 9 330 Peroxidase AT5G47000 56.000 1.02e-129 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03960 K00430 - gmx:100795676 548.125