Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03957 atgtcagGAGAGGAAATTTGGCCACCCATAGAAGAAGAGTCTAACACATCTATGCCTCCATTTGGTAACAGTAGTGGCTACAATTCAAGAACAGGAATTTATCACTCTCTCGTTAAGCTTGAAACCAAGCATGAAATACCAACAAAGCCAGACCTTAACACTGCAAGTCTTGTGCTATCACAGTTCCCAACAGGAGAACTTGCTGATGCAAGAATTGCATTCATTGATTTAAGTACTAATCATAGTATAACCTACGGCGAGATTCACCGATCAGCTTACTCCCTTGCAACGGCTTTGTTTCATGGACTTGAGATTAGAAAAGGCGACGTGGTATTTTTGTTGTCTCCAAACTCAATTTTGTACTCAACCATATGCTTAGCTGTGTTATCAATTGGTGCAATTCTTACCACTGCCAACCCTCTCAATACTAAGTCGGAAATCGCGAAACAAGTACATGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGACGAGTTACACAAATTGGTTCCAACTGGAGTTCCTACAATTCTCACCTCCAGTTCATCCGATGGAAAGTTTTTATCAGTTGAAGAGTTGATAGAAGGCTGCTACGGTTCACAAGAGTTACCGCATGTTCCTGTGGAACAATCAGACACTGCTGCTATACTTTACTCTTCAGGTACTACTGGAGTAAGCAAAGGTGTTGTTTTGACACATGCAAATCTCATAACCATAATGAAACTACTCTGCTGGTCTGCCGATGTATCTGCAGCTCAACACGATGTTTTCCTAGCCTTCATTCCAATGTTTCATATCTATGGACTGATGTTCTTTGGATTAGGGCTGTTGTGTGTTGGTGTTACGACAGTTTTGATGCAAAAATACGATTTCCAATCTATGCTTGTTGCTATCGAGAAATACAAAGTTAATAACATACCAGCAGTGCCACCAGTGATCCATGCGTTGGTGAAACACGCAAGCAAAAATCGGTGTGACATGTCTAGCCTAAGAAGAGTTGGCTCAGGTGCTGCACCTTTGAGTAAGGAAATGTCACAGGAGTTCAGAAAGATGTTTCCTTCGGTTGAACTAAGGTCGGGTTATGGACTAACAGAAAGTTGTGGTGGAGCAACATTTTTCGGGTCGGATAAAGATGCTGAAGCTCATCCAGAAGCATGTGGAAAGCTGATTCCAACTTTTTGTGCAAAAGTGATTGATATTGAAACAGGGAAGCCTTTGCCTCCTCACAAGGAAGGAGAGCTATGGCTGAAAAGTGCTACTATTATGAAAGAATATCTAGGAAATGTGGAGGCAACAACTGCAACAATTGATTCAGATGGTTGGTTAAAGACAGGAGATCTTTGTTATATTGATGAGAATGGAATCGTCTACATAGTTGAACGAATAAAGGAACTAATCAAGCACAACGGGTATCAGGTAGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATACCggttgaagatgaagaaactGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCCTATAAAAAAGTGAGAAAGGTGGGTTTCATTGACAGTATTCCAAGGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTGCTCAAAGCAAATATCAACTTGTCTCTAAGTTATGA 1713 0.4133 MSGEEIWPPIEEESNTSMPPFGNSSGYNSRTGIYHSLVKLETKHEIPTKPDLNTASLVLSQFPTGELADARIAFIDLSTNHSITYGEIHRSAYSLATALFHGLEIRKGDVVFLLSPNSILYSTICLAVLSIGAILTTANPLNTKSEIAKQVHDSGAKLAISAPDELHKLVPTGVPTILTSSSSDGKFLSVEELIEGCYGSQELPHVPVEQSDTAAILYSSGTTGVSKGVVLTHANLITIMKLLCWSADVSAAQHDVFLAFIPMFHIYGLMFFGLGLLCVGVTTVLMQKYDFQSMLVAIEKYKVNNIPAVPPVIHALVKHASKNRCDMSSLRRVGSGAAPLSKEMSQEFRKMFPSVELRSGYGLTESCGGATFFGSDKDAEAHPEACGKLIPTFCAKVIDIETGKPLPPHKEGELWLKSATIMKEYLGNVEATTATIDSDGWLKTGDLCYIDENGIVYIVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSEDQVIQFVAGQVAPYKKVRKVGFIDSIPRSAAGKILRKDLVAQSKYQLVSKL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03957 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Tsu01g03957 570 SUPERFAMILY Acetyl-CoA synthetase-like 69 561 - -
Tsu01g03957 570 CDD 4CL 46 558 - -
Tsu01g03957 570 Gene3D - 464 566 IPR045851 -
Tsu01g03957 570 Pfam AMP-binding enzyme 71 467 IPR000873 -
Tsu01g03957 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Tsu01g03957 570 MobiDBLite consensus disorder prediction 1 23 - -
Tsu01g03957 570 Gene3D - 42 463 IPR042099 -
Tsu01g03957 570 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 19 569 - -
Tsu01g03957 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03957 Tsu-Chr1 47154467 47156764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03957 25 566 Monolignol Biosynthesis Gene Families AT4G05160 42.545 5.74e-149 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03957 K10526 - gmx:100783104 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02366 01 25370714 25375759 Tsu01g03957 01 47154467 47156764 ECH
Tsu01g03957 01 47154467 47156764 Tsu01g03957 01 47154467 47156764 ECH