Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03955 ATGGCGATCTACCAGGGTCCTGGATTTCGATTCCACCCTACCGACGAAGAAATCGTTTGTTTCTACTTGAAACGAAAACTCACCGGAAACTTACCGTCGTGTTTCGATCATCTCGCTGTTATTGATATCTACAAGTTCGAGCCGTGGGATCTTCCAAgtttgTCAAAGTTGAAAACTAGGGATTTGGAATGGTACTTTTTCACTGGACTGGACAAGAAGTATGGTAACAGTATTAGGACGAATCGTGCTACTGATAGAGGTTACTGGAAGACTACTGGCAAGGATCGTGTTATAAAAAACGGCGAGGTTACTGTTGGAATGAAGAAGACTCTTGTTTATCACTTGGGTAGAGCTCCACATGGTGACAGGTCAAATTGGGTTATGCATGAATATAGGATGATTGATGAATCATTGGCCAAAGCTGGAGTGCAGGATGCATATGTTCTGTGTAGGATATTTGAGAAGAGTGGTTCTGGGCCGAAGAATGGGGAGAAATATGGGGCACCCTTTGTTGAAGCGGAATGGGAGACTGTTGTTGAAGGACAGGCGCTTCCCTTGCCGCCCGTTAATAATGAGGTTTTGAAACAAGAAGTGTCTGCTTCGGCTCCTGGTGTCAATGAATGGGTGAATGCTTCTGCACCTGATGTCAATGAATGGGTGAATGCTTCTGCACCTGATGTCAATGAATGGGTGAATGCTTCTGCTCCTGATGTCAATGAATGGGCGAATTCCTTGGTGGCCCTTGATAACGAGCCTTTCAAACAAATTCCTGCCCCTGctgatgatgattttgttgaaacCCTAGACCTTGATCAGGATCTTGATACTAGTGTCACAGTTGGAAGCGCTGATCTTCCATCAAACTACTGTTATGGAGAGTCCAGTAACCATCCTCAGTATTCCCAGGCATTTATTAATGATCATAAGCAACTGGAAGCTGCTACTGGTATTATTTATGATAATCAGGCTGATCAGCTTGATAATATGGCTGGTCTTTATGGTGTGGATATCAATTCAGTGCAAGATGGATACAATGGTGAGACAAACCATAACGAGAATCATCTGAATTTCAATTTTGCATCTGAAGATCCAGATCTATATTTTGATGCCTCTGCTTATCTCACGGGTTTGGGTGAAGAATACCTTGAAACCAATGATATTAAGAATCTTGACGAGGTTGTTCCCTCTGAGATAGATCCTTCTGTCGCAGCAATGGTAGATGAGTACCTTGCATGCCCTGATGCAGATATTTCCAATTATATATGCTTTGATTCTCCTGTGAATGCTGGGAGTGAAAGCCCCATTGCCAGCTATGGACAACCTTTCATTGATCAGAATCTGGAGGACGAAACCAATGGTAGTTCCTTGGCAAACAAACATGTTTTTGAAGCACAGTCTAGTAATGAAGTTTTGCCAAAGGACAATCTTGAGGCATCAACTTGGGTCTCAGGAGATGATGCAAATTATTTTGTGAAGCAAGCCAATAAATTTTTGGCCCACATACCAGCTCCACCTGCATTTGCTTCAGAGTTTCCTGCTAAGAAGTTTGCTCTTGAGATGCATCCTGGAGCAGAGTCTTCCAGTTCAGCTCATATAGCTGCAGGTATGATAAGCATAACAGATATCACTATTAGAGGCAACACAACAATGGATTGGATGGTGGGCAAGAATGGAGGTTTTAGCACCATAATGTCTACTGGGTTTTCCCAAACTGATGTCAACTCTCCTACTATGGTGCCTCTTTCTGGCTTGATCTGTAGCAAAACTGCACTCATGTTATCACATGGTTGGGTTTTCTTGACGGGTTTCTCAGTTGTGattctttctctgagtttcaagATTGGATGCTTCATGTATACCGGTAAATGA 1869 0.42 MAIYQGPGFRFHPTDEEIVCFYLKRKLTGNLPSCFDHLAVIDIYKFEPWDLPSLSKLKTRDLEWYFFTGLDKKYGNSIRTNRATDRGYWKTTGKDRVIKNGEVTVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDESLAKAGVQDAYVLCRIFEKSGSGPKNGEKYGAPFVEAEWETVVEGQALPLPPVNNEVLKQEVSASAPGVNEWVNASAPDVNEWVNASAPDVNEWVNASAPDVNEWANSLVALDNEPFKQIPAPADDDFVETLDLDQDLDTSVTVGSADLPSNYCYGESSNHPQYSQAFINDHKQLEAATGIIYDNQADQLDNMAGLYGVDINSVQDGYNGETNHNENHLNFNFASEDPDLYFDASAYLTGLGEEYLETNDIKNLDEVVPSEIDPSVAAMVDEYLACPDADISNYICFDSPVNAGSESPIASYGQPFIDQNLEDETNGSSLANKHVFEAQSSNEVLPKDNLEASTWVSGDDANYFVKQANKFLAHIPAPPAFASEFPAKKFALEMHPGAESSSSAHIAAGMISITDITIRGNTTMDWMVGKNGGFSTIMSTGFSQTDVNSPTMVPLSGLICSKTALMLSHGWVFLTGFSVVILSLSFKIGCFMYTGK 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03955 622 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 251 617 - -
Tsu01g03955 622 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Tsu01g03955 622 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Tsu01g03955 622 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Tsu01g03955 622 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 251 617 - -
Tsu01g03955 622 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 6 176 - -
Tsu01g03955 622 SUPERFAMILY NAC domain 5 155 IPR036093 GO:0003677|GO:0006355
Tsu01g03955 622 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03955 Tsu-Chr1 47141038 47144809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03955 490 614 NAC Transcription Factor Family AT5G04410 34.400 1.75e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu01g03955 NAM 5.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03955 - - mtr:MTR_1g090723 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03955 01 47141038 47144809 Tsu01g03955 01 47141038 47144809 ECH