Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03954 ATGGGTCGCGAACCTCTCTTACTTCCACCCCCAATCACAACCACACCCACACCCCCCTCTACCTCCACTCTCACTAACCTTCCTCTCGCTGTTTCAGCACCATCTGCTTCTGCTACTGCTGCTCCACCTACTTCTCTTGCTCCTGGCTTTAGGTTTCACCCAACTGATGAAGAACTCGTTATTTATTACCTCAAACGCAAGGTTTCTGGAAAACCCTTTCGATTTGATGCTATTGCTGAAGTTGACATCTATAAGAGCGAACCCTGGGACCTTTCAGATAAGTCAAGGTTGAAGACCAGGGACCAAGAGTGGTATTTTTTCAGTGCATTGGACAAGAAGTATGGAAATGGTGGCAGAATGAACAGGGCTACTCTTAAAGGGTACTGGAAAGCTACTGGAAATGATCGTCCGGTTAAGCACGACTTAAGGACTGTAGGGTTGAAGAAAACTTTGGTGTTTCATAGTGGCCGAGCTCCTGATGGTAAGAGAACTAACTGGGTTATGCACGAGTACAGGCTCGTTGAAGAAGAGATGGAGAGGGATAGGGTTGGAAATGGATCCTCTCAGCCACAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATTGGACCTCCAAATGGACAACGATATGCACCTTTTGTTGAAGAAGAGTGGGAAGATGGATCGGGAATGGTTCCTGGAGCAGAGCTCGTGCATAATGGTCCTCTTGACCGTCCTCTTGGCCACCCTCTTGACCGCCCTCTTGACCGCCCTCTTGATCGCCCTCTTGACCGCCCTCTTGATCGCCCTCTGCGTATTGAATACAACAACGGCGGTGTTTCATGCAGTGAAGGAAGACATAATGTTGTGCAGGACACtcaatccaacaataaaacTTCACTTGATGTGAACAAGCTACCGATTGAGACCCAAAATCTTCTTGCTGTGTGCAAGAGGGAGAGCATGACTGAGTTTTCATCACCAGAAAAGGATGACTCTAAGCGTATGCATGTGGATGATGAGGACCCATCACCCCAAACTGAAAACCCAAAGCCCTTACCCTTACCTCAAATATACAAAAGGCGGCGATATAACTTGAACACCAATCACTCTAATGTTTCCGGAGATTCATTCCCTAACAGTCAGGATCCATGCTCATCCACAATAACCACTGCCGCGACAACAGTCCCCACAACTGCTGCCCCAGCCAAAACTACCAACCCTGCACCGAAGAAACATTTCCTGTCTGCACTGGTGGAGTTTTCTCTGCTAGAATCACTTGAATCAAAGAAGGTAACCCATGCCTCGGTTCAGCCGGAAGATTTTGACTTGGGGAATCTTGATTCGACTGTGCCTCCCAGTGTTGCAAAGTACATCAGACACTTGCAGAGTGAAACTCAGAAGCTTGGCGTTGAAAAGGAGACAATGCGGTTCGAGTTAACAAGTGCTCAAGCCATGATTAACATTCTCCAGTCTCGCGTTGAAACTCTGAGTAAAGAGAACGGAGAAATGAAGCAGATGATGATGAGAAATCCTTAG 1527 0.4656 MGREPLLLPPPITTTPTPPSTSTLTNLPLAVSAPSASATAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAIAEVDIYKSEPWDLSDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATLKGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEEMERDRVGNGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWEDGSGMVPGAELVHNGPLDRPLGHPLDRPLDRPLDRPLDRPLDRPLRIEYNNGGVSCSEGRHNVVQDTQSNNKTSLDVNKLPIETQNLLAVCKRESMTEFSSPEKDDSKRMHVDDEDPSPQTENPKPLPLPQIYKRRRYNLNTNHSNVSGDSFPNSQDPCSSTITTAATTVPTTAAPAKTTNPAPKKHFLSALVEFSLLESLESKKVTHASVQPEDFDLGNLDSTVPPSVAKYIRHLQSETQKLGVEKETMRFELTSAQAMINILQSRVETLSKENGEMKQMMMRNP 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03954 508 MobiDBLite consensus disorder prediction 245 266 - -
Tsu01g03954 508 MobiDBLite consensus disorder prediction 239 266 - -
Tsu01g03954 508 ProSiteProfiles NAC domain profile. 46 202 IPR003441 GO:0003677|GO:0006355
Tsu01g03954 508 Coils Coil 476 503 - -
Tsu01g03954 508 MobiDBLite consensus disorder prediction 363 382 - -
Tsu01g03954 508 MobiDBLite consensus disorder prediction 1 23 - -
Tsu01g03954 508 MobiDBLite consensus disorder prediction 316 353 - -
Tsu01g03954 508 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 38 504 - -
Tsu01g03954 508 Gene3D NAC domain 55 205 IPR036093 GO:0003677|GO:0006355
Tsu01g03954 508 SUPERFAMILY NAC domain 38 203 IPR036093 GO:0003677|GO:0006355
Tsu01g03954 508 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 38 504 - -
Tsu01g03954 508 Pfam No apical meristem (NAM) protein 48 173 IPR003441 GO:0003677|GO:0006355
Tsu01g03954 508 MobiDBLite consensus disorder prediction 319 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03954 Tsu-Chr1 47132221 47138631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03954 26 502 NAC Transcription Factor Family AT3G10480 45.672 2.49e-116 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu01g03954 NAM 5.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03954 - - gmx:100808783 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03954 01 47132221 47138631 Tsu01g03954 01 47132221 47138631 ECH