Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03950 ATGGCGAGAAACAAGGTGAAACTTGCATTTATCTCCGATGAATCGAAAAGGAGAGCAGCATACaataaaagaaagaacaatGTCATAAAGAAGGTGACCGAACTCACAACTCTTTGTGATGTTCCGGCTTGTGCTGTAATTTCCAATCCATATTCCCACGTAGAGGTTTGGCCAAATCTAGAGGGAGCCAAGAAGGTGATTGAGAGGTATCGAAATTCACCAGTGATAAATGAAAGCAAGAATGTTAACCACGAGAGATTCATCATGCAAAGGACCGCTAAAGCTAGAAACCAACTAAGAAAGTTGAAACAAGACAATCGTGAGAAAGAGCTGAATCTTCTTATGTTCGAGTACCTGCGAAACAACAATGTCTCAGACAACTCGACTGCTGAAGAATTGAAAGGTTTAGATAAGGTCGTTGGGAAGATGCTGAAGGAAGTTGATAACAAGATTAATACACTTGATTGa 468 0.3932 MARNKVKLAFISDESKRRAAYNKRKNNVIKKVTELTTLCDVPACAVISNPYSHVEVWPNLEGAKKVIERYRNSPVINESKNVNHERFIMQRTAKARNQLRKLKQDNREKELNLLMFEYLRNNNVSDNSTAEELKGLDKVVGKMLKEVDNKINTLD 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03950 155 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Tsu01g03950 155 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Tsu01g03950 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu01g03950 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu01g03950 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu01g03950 155 PANTHER MADS BOX PROTEIN 3 153 - -
Tsu01g03950 155 Gene3D - 13 134 IPR036879 GO:0003677|GO:0046983
Tsu01g03950 155 Coils Coil 92 112 - -
Tsu01g03950 155 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Tsu01g03950 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Tsu01g03950 155 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu01g03950 155 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03950 Tsu-Chr1 47109765 47110232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03950 1 154 Type I MADS-box Gene Family AT5G48670 40.385 2.34e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g03950 SRF-TF 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03950 - - gmx:100792290 166.777