Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03947 ATGGAACCAGCCCCTGAACCTCAACAGCAACAACTTTCTTTGGCCTCTAGGGAACACACCAACATCATGAAAGGCAAAAGAACCAAAAGGGTTAGGCCACAATCTCCTATACCTTTTTCTATTACTGCTAATTCTTCGACCGAAGGAGGAGCAGGAACAGGAGGAGGAGGAACAAGAGAAGATTGCAACGTCGTCAACAACagcaacatcatcaacaataatAACAGTTCTCCGACAACTTCTTATGTTGCGGAGAAACAGGAGGACAATATTCTTGATGAAGAATATGATATGgcaaattgtttgattttattggCACAAGGACAATCAAAGGAGTCGTCGAAAAACACCGATGAATATGACGGTGGAATGATGAACTATACAAAATATAGCAGTAGAAAATTCATGGAAGCTGCTACTTTGGATTCTGGAAGAGCAGGTTACTATGTTTATGAATGCAAAACATGTAATAGAACTTTTCCTTCATTTCAAGCACTTGGTGGCCATAGAGCAAGTCATAAAAAGCCAAAAGCATTAGCAATTGCTCAAGAGAGAAAACATCAACTTTTTGATGATGATCaagattttcaattcaaaaccAATCATAAATCAATTTCCCTtcaattcaacaacaacaatggtaAGGGAAATCTTTATGCCggaaacaacaataacaacaacaacggCAACAACAATAATAAGTCTAAGGTTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCACTTGGTGGACATATGAGGCGACACCGCGCGCCTGTGGGGACCGTTGCTCCTGCCAACACCACACTCTCCTTGACACCAATGGCTTTGGAACATGATGAAGATCAACAACCTAGAAAGAAAAGGAATGTTTTGTCTTTGGATTTAGATCTCAATCTTCCTGCACCTGAAGATGAACATAGAGAATCAAAGTTTGCCTTTGCTTCCAAgcaacaacaccaacaacatggccaaaaacaacaacagcagcaacaacagcaacaacaacagcaacagaaacaacaacaaacaagtCTTGTCTTCTCTTCGCCGGCTTTGGTGGATTGTCATTACTAA 1089 0.3388 MEPAPEPQQQQLSLASREHTNIMKGKRTKRVRPQSPIPFSITANSSTEGGAGTGGGGTREDCNVVNNSNIINNNNSSPTTSYVAEKQEDNILDEEYDMANCLILLAQGQSKESSKNTDEYDGGMMNYTKYSSRKFMEAATLDSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAQERKHQLFDDDQDFQFKTNHKSISLQFNNNNGKGNLYAGNNNNNNNGNNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTVAPANTTLSLTPMALEHDEDQQPRKKRNVLSLDLDLNLPAPEDEHRESKFAFASKQQHQQHGQKQQQQQQQQQQQQQKQQQTSLVFSSPALVDCHY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03947 362 SUPERFAMILY beta-beta-alpha zinc fingers 150 260 IPR036236 -
Tsu01g03947 362 SMART c2h2final6 238 260 IPR013087 -
Tsu01g03947 362 SMART c2h2final6 151 173 IPR013087 -
Tsu01g03947 362 Coils Coil 330 350 - -
Tsu01g03947 362 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Tsu01g03947 362 MobiDBLite consensus disorder prediction 1 18 - -
Tsu01g03947 362 MobiDBLite consensus disorder prediction 317 362 - -
Tsu01g03947 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Tsu01g03947 362 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 16 362 - -
Tsu01g03947 362 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Tsu01g03947 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 260 IPR013087 -
Tsu01g03947 362 PANTHER ZINC FINGER PROTEIN ZAT5 16 362 - -
Tsu01g03947 362 MobiDBLite consensus disorder prediction 319 354 - -
Tsu01g03947 362 Pfam C2H2-type zinc finger 150 176 - -
Tsu01g03947 362 Pfam C2H2-type zinc finger 237 263 - -
Tsu01g03947 362 Gene3D Classic Zinc Finger 222 293 - -
Tsu01g03947 362 Gene3D Classic Zinc Finger 128 207 - -
Tsu01g03947 362 MobiDBLite consensus disorder prediction 35 52 - -
Tsu01g03947 362 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03947 Tsu-Chr1 47084248 47085349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03947 15 362 C2H2 Transcription Factor Family AT5G04390 44.041 3.86e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g03947 zf-C2H2_6 8.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03947 - - gmx:100819786 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03947 01 47084248 47085349 Tsu01g02333 01 25041396 25042325 ECH
Tsu01g02333 01 25041396 25042325 Tsu01g03947 01 47084248 47085349 ECH
Tsu02g04632 02 55326999 55328017 Tsu01g03947 01 47084248 47085349 ECH
Tsu02g03676 02 41378128 41379152 Tsu01g03947 01 47084248 47085349 ECH
Tsu01g03947 01 47084248 47085349 Tsu01g03947 01 47084248 47085349 ECH