Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03946 ATGGAATGGTGTATAAGTGCACTGCATCACACAACTGTTGCTGTTAGAATTCTCCACTCTAATGGATACTGTAAAAGCAAACAATTCCAGCAAGAGTTAGAGATACTGAGCAGAATTCGTCATCGAAACTCGCTTCTCCTCCTAGGTGCATGTCCTGATCATGGATGCCTTGTGTGTGAAACACAGAGAACAGTAGCTAGGAGGATAGACTACTCCAGGAAAACAGTACCACCAATCCCATGGTTGGAGAGGTTTCAAATAACTTGGGAAGTTGCATCAGCTCTTTCCTTTCTTCACACTCAAAGCCACAACCTATCATCCATTGCAATTCGAAACTTGCAAATATCTTACTTGGTAACCTCGTCAGCAAGATTGGTAATGTCGGTGTTTCTACAATCCTCAATTCAGATGATTTATCATGTATAA 426 0.4131 MEWCISALHHTTVAVRILHSNGYCKSKQFQQELEILSRIRHRNSLLLLGACPDHGCLVCETQRTVARRIDYSRKTVPPIPWLERFQITWEVASALSFLHTQSHNLSSIAIRNLQISYLVTSSARLVMSVFLQSSIQMIYHV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03946 141 PANTHER OS02G0152300 PROTEIN 7 101 - -
Tsu01g03946 141 Pfam Protein tyrosine and serine/threonine kinase 9 113 IPR001245 GO:0004672|GO:0006468
Tsu01g03946 141 Gene3D Transferase(Phosphotransferase) domain 1 2 138 - -
Tsu01g03946 141 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 7 101 - -
Tsu01g03946 141 SUPERFAMILY Protein kinase-like (PK-like) 9 104 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03946 Tsu-Chr1 47076572 47076997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03946 8 100 U-box Gene Family AT5G61560 56.000 2.01e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu01g03946 PK_Tyr_Ser-Thr 8.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03946 - - pop:18098401 115.161