Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03938 ATGTTTTCTAGGTTGATACGTTCTCATGACCATGAAGGAGgaagtgttgttgttgttcaggaagaaacaaatcatcatcatagtCACCTTGCTGACCCTTGTCTTGTTCTTACTTCTGATCCTAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGTTTTGTTGATGCTGTCACTCAACTTGGTGGTCCTAGCAAAGCCACCCCAAAAGCAATCATGAGGACCATGAACGTCAAGGGTTTGACACTCTATCATTTGAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAACAAGCTGGAAAAGATTTGGACGAGGGATGCAAAGATGCAATATCAGGTTCATATCTTCTTGAAAGCCCTAGTACTGAAAACTCGTCTCCAAAGTTACCAGCTTCTGATGCAAATGAGGGTCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAGAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCGGAACGGAGATATATGGCCATGCTTGAGAGAGCATGTAAGATGTTGGCTGATCAGTTTATTGGCGATCAAACTATAGACACAGACATCCAAAAATTTCAAGAACTACCAAGTACCGAGCTAGGTGGAAATGGAATGCATGTTTCAGAAGTACCCTATATTCTCCAGCCCCAAGGTGCAAACTGTTCAACTGAAAGTTGCTTAACATCACTTGAAAATCTCAGAGGATTGACTCTAGAAGGACCACTTGGTGGTGCGACAAAGAGGATGCTGGGTTTGGACTCGATGGTAGCGCCTTTGATCTGGAGTGATACTAACATGAGAGCTCAAGGCATTCATTTATCCCAAGTCAATCCTCAAGGAATAGCAAGGTATGGCATGTAG 894 0.4172 MFSRLIRSHDHEGGSVVVVQEETNHHHSHLADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDLDEGCKDAISGSYLLESPSTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDQTIDTDIQKFQELPSTELGGNGMHVSEVPYILQPQGANCSTESCLTSLENLRGLTLEGPLGGATKRMLGLDSMVAPLIWSDTNMRAQGIHLSQVNPQGIARYGM 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03938 297 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Tsu01g03938 297 Gene3D - 41 99 - -
Tsu01g03938 297 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 297 IPR044848 GO:0003700
Tsu01g03938 297 SUPERFAMILY Homeodomain-like 42 97 IPR009057 -
Tsu01g03938 297 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 297 - -
Tsu01g03938 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Tsu01g03938 297 Pfam MYB-CC type transfactor, LHEQLE motif 140 185 IPR025756 -
Tsu01g03938 297 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03938 Tsu-Chr1 46987908 46991986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03938 31 241 G2-like Transcription Factor Family AT3G24120 47.660 3.34e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g03938 Myb_DNA-binding 8.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03938 - - gmx:100779871 449.899