Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03928 ATGGAGCATCACTTGGTGTTGCTTCTTTGTTTTTCTACATTGTTATATGTTTCTTCTGCTTTAAACTCTGAGGGTTTAGCTCTATTATCACTCTTAAGCCACATGAATGTTGTTCCTCCTATCATAAACTCCACATGGAAATCATCTGATTCCACTCCATGTTCTTCTTCATGGGAAGGAGTAGAATGTGATCATGCTTTAAATGTAATAACTCTTAATCTAAGTGATTATTCAATTTCAGGTCAATTAGGATCTGGAATTGGAAAATTAAATCACCTTCAAACCCTAGATTTGTCAATTAATGATTTCTCAGGAGAAATTCCTTCAGAATTAAGCAACTGTAGTATGCTCGAGTACATCGATCTTTCTTTAAACAACTTTAGTGGTGAAATTCCTCAATCCTTGTTTCAAATGAATAGTTTGACAGATTTGTATCTTTTCAGTAATAGCTTAAGTGGTTCAATTCCTTCTTGTATTGAAAATGTTACTATTCTTATTGAAATAGATCTTAGTAGTAACCTGTTGTCAGGAACAATTCCAAAATCCATTGGAAATTGTAGTCAATTGGGTTACCTAATTTTGGACTCGAATCAATTGGATGGAGTTCTTCCCGAGAGTCTAAACGATCTAAAAGAACTTGTTCAACTAAGTCTCAATAGTAATAATCTCGAAGGTACCATTCTAGAGttgaaaaattgcaaaaacTTAAATAGTTTGAGTCTTTCAAACAACAAATTTATTGGTAGTATTCCATCAAGTTTAGGGAATTGTAGTGGTTTAACAGAATTCTATGCTGCAATAAATAACTTAGAGGGTAGCATACCATCAAGCTTAGGTTTGCTTCACAACCTTACTAAACTAATAATTCCACAGAATCGTTTTTCTGGGAATATACCTCCACAGATCGGTAATTGTAAGTCATTGAAAATGTTACATTTGTATACGAATGAGCTTGAGGGGGAAATTCCTAGGGAGTTGGGAAAGTTGAGTAAATTACACGAGCTTCTATTGTTCGAAAACCATTTGGTAGGTGAAATTCCACTTAGCATATGGAAAATTCAAAGCCTTGAGCATGTCCTTGTGTATAATAATAGTCTATTGGGGGAGCTACCTTTGGAGATGACCGAGCTCAAAAATCTCAAGAACATATCATTGTTTGGCAACCAATTCTCGGGAGTTATACCTCAAACTTTAGGAATTAATAGCAGTTTGGTGCAGTTGGATTTTATGTTTAACATGTTCAATGGTACACTTCCACCAAATCTTTGTTTCGGAAAGCAATTAGCAGTGCTGAATATGGGTGGTAATCAATTAATTGGAAGCATACCTTCTGGTGTAGGAAGGTGTACAACTCTCAGAAGGGTGAGACTcgaagataataatttttccgGGCATCTTCCTGATTTTGAAAAGAATCCGAATATCTCGTATATGAGCATTGGCAACAACAGTATCCATGGAACAATTCCGTCAAGTTTGAGTAACTGCACAAATCTCTCTCTTTTAGATTTGTCCGTGAACAGCTTAACGGGTTTTGTACCCTTGGAGCTTGGAAACCTTGTGAATCTCCAGAGTTTGAATCTTTCTTACAATAATTTGGAAGGTCCTTTGCCACATCAACTTTCAAAGTGTACCAAAATGATTAGTTTTGATGTGGGATTCAATTTCCTTAATGGTTCGTTTCCATCAAGTTTTCAGAGCTGGACAGAATTAGCCACTTTAATTCTTAGTGAGAATCGTTTTAGTGAGGGAATCCCAACTTTCTTGTCGGAATTTGGAAATCTCAACGTGTTAAAACTTGGTGGAAATAACTTCGGAGGAAATATTCCAAAATCAATTGGAAAATTGCAGAGTTTGTCGTATGATTTGAATCTAAGTGCTAATGGACTAGTAGGTGAGCTCCCTGGGGAGATTGGAAACCTGAAGAGTCTGCAAAATCTAGATCTATCTTGGAACAATTTGACAGGAAGCATACAAGTTCTCGACGAGCTAAGTTCATTATCCGAATTGAACATCTCATACAATTCTTTTGAAGGTTCTGTATCACAAAAACTTACGAACTTATCGAGTTCTTCTTCATCGTTTTTGGGCAATCCTGGTCTGTGTGTTAGCCTTTCGTTATACAATGGCTTGAACTTCTCAAGAAGTAGCCATTTAAACCTATGTAATCAAGATGCCGTAAAATCAAAAGGTCGCAGTAAAGTTGCAATTGTGATGATAGCACTTGGATCCTCAATATTTGTGGTGCTATTGCTAGggctaatttatatatttttagtcagaAAGTCTAAACAGGAAGCCATCGTCACCGAAGAAAATGATCCTTCCGACCTTCTCAATAAAGTGATGAAAGCTACAGAGAATCTAAATGATGAGTATATTATAGGCAGAGGTGCTGAAGGAGTTGTTTACAAAGCTGCAATAGGTCCAGACAATATTTTGGCAGTGAAGAAGCTTGTATTTGGCGAGAACGAACGAAAACGCTTACGCATGTTGAGAGAAATTGAAACACTTTCACAGATTAGGCATAGAAATTTGGTGAGGCTTGAAGGTGTTTGGTTGAGAGAAAATTATGGTCTAATCTCATACAAATACATGCCAAATGGAAGCCTTTATGAAGTTTTGCACGAGAAGAATCCGCCGCAATCATTAAAATGGAATGTCAGGAATACGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTTCATTATGACTGTGATCCTGTCATAGTTCATAGAGATATCAAAACAAGCAACATACTTTTAGATTCTGACATGGAGCCTCATGTTGCTGATTTCGGCCTTGCTAAGCTTTTAGATCAGTCTTCTAGTTCTACCTCAACACAGTCAATAAATGTTTCTGGTACACTTGGTTATATTGCACCAGAGAATGCATATACAACTGTAATGGGAAAGGAATCTGATGTATACAGTTATGGAGTGGTTTTGCTTGAGTTGATATCAAGAAAGAAGGCATTAGATCCATCATTTATGGAAGGAATGGATATTGTTTCTTGGGTGAGATCATTGTGGGAGGAAACAGGAGTTATTGATGAAATTGTTGATTCAGAACTTGCCATTGAAATTTCTAGATATAATTCAAATGTGATGAAGGAAGTAACTAAGGTGCTTTTGGTGGCTTTCAAATGTACAGAAAGGGATCCACGTAGGAGACCTACAATGAGAGATGTTATCAAGAATTTGTAG 3210 0.3607 MEHHLVLLLCFSTLLYVSSALNSEGLALLSLLSHMNVVPPIINSTWKSSDSTPCSSSWEGVECDHALNVITLNLSDYSISGQLGSGIGKLNHLQTLDLSINDFSGEIPSELSNCSMLEYIDLSLNNFSGEIPQSLFQMNSLTDLYLFSNSLSGSIPSCIENVTILIEIDLSSNLLSGTIPKSIGNCSQLGYLILDSNQLDGVLPESLNDLKELVQLSLNSNNLEGTILELKNCKNLNSLSLSNNKFIGSIPSSLGNCSGLTEFYAAINNLEGSIPSSLGLLHNLTKLIIPQNRFSGNIPPQIGNCKSLKMLHLYTNELEGEIPRELGKLSKLHELLLFENHLVGEIPLSIWKIQSLEHVLVYNNSLLGELPLEMTELKNLKNISLFGNQFSGVIPQTLGINSSLVQLDFMFNMFNGTLPPNLCFGKQLAVLNMGGNQLIGSIPSGVGRCTTLRRVRLEDNNFSGHLPDFEKNPNISYMSIGNNSIHGTIPSSLSNCTNLSLLDLSVNSLTGFVPLELGNLVNLQSLNLSYNNLEGPLPHQLSKCTKMISFDVGFNFLNGSFPSSFQSWTELATLILSENRFSEGIPTFLSEFGNLNVLKLGGNNFGGNIPKSIGKLQSLSYDLNLSANGLVGELPGEIGNLKSLQNLDLSWNNLTGSIQVLDELSSLSELNISYNSFEGSVSQKLTNLSSSSSSFLGNPGLCVSLSLYNGLNFSRSSHLNLCNQDAVKSKGRSKVAIVMIALGSSIFVVLLLGLIYIFLVRKSKQEAIVTEENDPSDLLNKVMKATENLNDEYIIGRGAEGVVYKAAIGPDNILAVKKLVFGENERKRLRMLREIETLSQIRHRNLVRLEGVWLRENYGLISYKYMPNGSLYEVLHEKNPPQSLKWNVRNTIAVGIAHGLAYLHYDCDPVIVHRDIKTSNILLDSDMEPHVADFGLAKLLDQSSSSTSTQSINVSGTLGYIAPENAYTTVMGKESDVYSYGVVLLELISRKKALDPSFMEGMDIVSWVRSLWEETGVIDEIVDSELAIEISRYNSNVMKEVTKVLLVAFKCTERDPRRRPTMRDVIKNL 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03928 1069 ProSiteProfiles Leucine-rich repeat profile. 643 665 IPR001611 GO:0005515
Tsu01g03928 1069 Pfam Protein kinase domain 792 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03928 1069 ProSiteProfiles Protein kinase domain profile. 789 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03928 1069 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 4 159 - -
Tsu01g03928 1069 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 129 1068 - -
Tsu01g03928 1069 Gene3D Ribonuclease Inhibitor 230 470 IPR032675 -
Tsu01g03928 1069 SUPERFAMILY Protein kinase-like (PK-like) 778 1068 IPR011009 -
Tsu01g03928 1069 Gene3D Ribonuclease Inhibitor 134 229 IPR032675 -
Tsu01g03928 1069 Pfam Leucine rich repeat N-terminal domain 22 64 IPR013210 -
Tsu01g03928 1069 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 159 - -
Tsu01g03928 1069 SUPERFAMILY RNI-like 270 675 - -
Tsu01g03928 1069 Gene3D Phosphorylase Kinase; domain 1 758 865 - -
Tsu01g03928 1069 Pfam Leucine rich repeat 167 223 IPR001611 GO:0005515
Tsu01g03928 1069 Pfam Leucine rich repeat 473 533 IPR001611 GO:0005515
Tsu01g03928 1069 Gene3D Ribonuclease Inhibitor 471 586 IPR032675 -
Tsu01g03928 1069 SMART serkin_6 789 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03928 1069 Gene3D Ribonuclease Inhibitor 587 708 IPR032675 -
Tsu01g03928 1069 ProSitePatterns Serine/Threonine protein kinases active-site signature. 911 923 IPR008271 GO:0004672|GO:0006468
Tsu01g03928 1069 SUPERFAMILY L domain-like 50 419 - -
Tsu01g03928 1069 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 129 1068 - -
Tsu01g03928 1069 Gene3D Ribonuclease Inhibitor 26 133 IPR032675 -
Tsu01g03928 1069 Gene3D Transferase(Phosphotransferase) domain 1 866 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03928 Tsu-Chr1 46906043 46909683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03928 6 1069 Receptor kinase-like Gene Family AT1G17750 50.923 0.0 1000
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu01g03928 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03928 - - gmx:100817655 1424.07