Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03926 ATGTTCATAGCTCTATTTTCATGTTACTGTAACCACAGAAACCGTCAAAACAGACTGCAATTTAGAGGAACAAATTCTAACAGAACAATGGTCATCACAGAGACAGATACTGAAGTGAATAATGAAGTTTGTGTGGAAGAACAAGATTCCATTCTTAATAGTTACCCTGTTTTGTTGTACTCTCAAGTCAAGCTTCATCATAAAGATGATTCAACATCACTCATTTGCTCAATTTGTTTGGCAGATTATAAAGATTCTGAGTTGTTGCGACTCTTATCTGATTGTGGTCACTTTTTTCATAAGGAATGTGTTGCTACATGGTTTAGGCTAAACATGTCATGTCCCATGTGTCGGAACTCGCCATTTCCAACACCCATTGCTCAAGTTACACTATTGGAAAACCACACATGA 411 0.3698 MFIALFSCYCNHRNRQNRLQFRGTNSNRTMVITETDTEVNNEVCVEEQDSILNSYPVLLYSQVKLHHKDDSTSLICSICLADYKDSELLRLLSDCGHFFHKECVATWFRLNMSCPMCRNSPFPTPIAQVTLLENHT 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03926 136 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 3 129 - -
Tsu01g03926 136 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 129 IPR045899 -
Tsu01g03926 136 SUPERFAMILY RING/U-box 53 122 - -
Tsu01g03926 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 122 IPR013083 -
Tsu01g03926 136 SMART ringv_2 75 118 IPR011016 GO:0008270
Tsu01g03926 136 SMART ring_2 76 117 IPR001841 -
Tsu01g03926 136 Pfam Ring finger domain 76 118 IPR001841 -
Tsu01g03926 136 ProSiteProfiles Zinc finger RING-type profile. 76 118 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03926 Tsu-Chr1 46898292 46898702 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03926 47 127 C3H Transcription Factor Family AT2G35910 50.617 3.59e-24 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03926 - - mtr:MTR_1g090460 164.081