Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03924 ATGAACAACACTTCCATTAATTCTGAAAACCCTTCAGAAAAATCAACTACATTACCATATTATTACATTGGATTTTCTTTTGCATTTATCCTCCTTGTGATCTTCATACCTATCTATTTCAGTTACTGTAACCATACGAATTCGCGAAACAGACAGCAATCTGCTGCTGGTAGCAACAACAACAGAACAGTGATCTTGATGGAGAGAGATCATACAACTGAAGTGAATATTGAAGAACAAGATGATAATATCCTTAATAGTTACCCCGTTTTGTTCTACTCTCAAATTAAGCTTCATAAGCCTGCAGATTCAACATCACTTATTTGCTCAATTTGTTTGGCAGATTATAAAGATTCGGAGTTGTTGCGAGTCTTATCTGATTGTGGTCACTTTTTTCATAAGGAATGTGTTGCTACATGGTTTAGGCTAAATATGTCATGTCCAATGTGTCGAAACTCGCCACTTCCAACATCCCTTGCTCAAGTTACACCATTGGTAAACTAG 504 0.3631 MNNTSINSENPSEKSTTLPYYYIGFSFAFILLVIFIPIYFSYCNHTNSRNRQQSAAGSNNNRTVILMERDHTTEVNIEEQDDNILNSYPVLFYSQIKLHKPADSTSLICSICLADYKDSELLRVLSDCGHFFHKECVATWFRLNMSCPMCRNSPLPTSLAQVTPLVN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03924 167 SUPERFAMILY RING/U-box 85 154 - -
Tsu01g03924 167 SMART ring_2 109 150 IPR001841 -
Tsu01g03924 167 Pfam Ring finger domain 109 151 IPR001841 -
Tsu01g03924 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 155 IPR013083 -
Tsu01g03924 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 161 IPR045899 -
Tsu01g03924 167 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Tsu01g03924 167 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03924 Tsu-Chr1 46886278 46886781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03924 21 167 C3H Transcription Factor Family AT2G35910 39.474 4.03e-26 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03924 - - adu:107466513 164.466