Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03923 atgatgaacaacaACAGCACCTCACAACCCCCAAACAACGACGATTTTGACGCGAATGGGTTCACGTACATCTTAACATTTGTATTTGCTCTCGTGTTCTTGATTCTTACAATTGTTGTTGCTTGTGTTCGACTTCGTATGTCACGGGGTCCAGACATGATCAATATTTTGTCCGGTTTTCCATCACATCGTCAGGAAGACTCGATTATGGAGCAAGGGCTCCGGCGTAATAGGGACACAAGTTTTGAAGGATACCCAAAAATGTTATACTCTCAAATTGAAAAGAATATTTTAGGTGGTTCTTCAACTTCAAGTTGCTCTATTTGCTTAGGGGATTACAAAGAAAATGACATTTTGAGGTTACTTCCTGATTGTGGTCATCTTTATCATGTTGCTTGTGTTGATCCATGGCTTAGTTTACATTCCACTTGTCCTATATGCAGAAAACCATTGCTAGCTTCAAGCTAA 468 0.3889 MMNNNSTSQPPNNDDFDANGFTYILTFVFALVFLILTIVVACVRLRMSRGPDMINILSGFPSHRQEDSIMEQGLRRNRDTSFEGYPKMLYSQIEKNILGGSSTSSCSICLGDYKENDILRLLPDCGHLYHVACVDPWLSLHSTCPICRKPLLASS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03923 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 152 IPR045899 -
Tsu01g03923 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 152 - -
Tsu01g03923 155 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Tsu01g03923 155 CDD RING-H2_PA-TM-RING 106 148 - -
Tsu01g03923 155 SMART ring_2 106 147 IPR001841 -
Tsu01g03923 155 Pfam Ring finger domain 105 148 IPR001841 -
Tsu01g03923 155 SUPERFAMILY RING/U-box 105 152 - -
Tsu01g03923 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03923 Tsu-Chr1 46882769 46883236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03923 5 154 C3H Transcription Factor Family AT5G06490 33.146 1.09e-22 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03923 - - gmx:102663718 184.111