Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03914 ATGGCGGGGAACTTCAGATTCATGATGGATCAGAAGGATATTGTAAGATTCTTGACAACAACTATTGATAGTTTTATTCAAGATAGATTAATCAACAAAGAACAAAGAACACAACATAAAGATCAATGTGCTGAAAGGTTAGCAGCTGAAGATGAAAATGGCGACAAAGAAACCGAGGTAGAATATTCGGATCAAGCAGTATTGGCAAATCTAGATTGGGGTATTGAAGCTCTTGAAGAAGCTATTAATACATATAATATGGAAACTAAACTTGCAAGATTAGATTATGCTGAGAAAATGTTGCAAGTGTGTGCAATGTTGAACCCTAAGCAGAAAACTGCTGGTGTGCCAAATTCATATTTATCAGCTTGGGCacatttaaatttatcatatttatggAAGTTGAGGAACAATATTCAGAGTTGTATTTTTCATGCTCTTGAGATGTTTATCGTCGATCCATTTTTCGCTAGGATTGATTTCGCGCCTGAGTTATGGAAAAACCTGTTTCTTCCTCATATGAGTTCAATTGTAGGGTGGTATTCAGAAGAGAGACATAAGCTTATGATGGAAGTGATACCTGAATCTTCTGATTTTTCGTATACTGCTGATTTCGATAAAGTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCGAATCAACTAGATAAATTGCAAAAACTTGAGCAGCTTTATGGAGAGTCTTTAGATGAGAACACAAAGCTATATGCAAAATATTATAATGATTGTATGAACTCTGATTCTACCTCAAGTAAGAAGGTTATTCCGATGTTGCCAATTGCTGAGCCTCCAATGACTCCTTTGCATGAGTTGAGCCGGTCTGTTCCTGATTTCGTAAAATTTGGTCCTATTTTGCCTAAGAGCTCTGGATTTTCTATGGCAACAAGAAGGTCTAATGATGGTTTAAATGAAACAACCAGAGAGAATTTAACTTCCAATTCCAACCATTCAAAGGGGGAGAAATCATCCATGTGGGGTGCTAAGGAGAGCATAATTGAAGAGATTGAAGATGATTCAGATTCTGAGCATTATGACGCGTCTGTGGATTCtgataaaatcaatattttctcACCGGACTTGAAGACAAATATCAAGGATGAGGATGTTGAACCAAATGTATATCGATCAAACCAGAAAGATCAAATGCAATCTCCTAATATCTCTCCTATGGAATCTCCAAGAGCTGCTCGAAATCATTCATCTACAAATCCTCATATCCATAGGAAAAAAGAATCAAAGTTTTTGCGGTTACTATCTAATCGTTTTAGGGGATCAACTATTTCTGATCACTCTCTATCATCATCTCCTGACACGAGCTCTGATCATATTTTCAATGGTGATGAAGAAGAAGCGATGGTCTTGAATAATATTAAGAGGAAAAATGATAGTCAAACAGCAAGTGTGAATCAAGACATTGAGAATAATCTGGTGTTGAATGACAGTTCCCATTGTGAAAGTGAGGATGGATATCAAAGTTCTACTTCATTTCCAAAATTAGGGAAACTGAATATTGGATCAAAACCACCCAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTGGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCGATTCAAGAGTGGCTCGGAACAGGAAACACTACATGTCCGATCACACGGCAGCCTCTATCTGCAAACATCTTACCGAAAACAAACTATGTTTTGAAGAGATTGATAGTATCATGGAAAGAACAACATCCTGAACTAGCTCAAGAATTTTCAAATTCTAACACGCCAAGAGGTTCTTCATGTTCTCCATCTGCAAAAGACATCACAATGATTTCGACTATACAAAGAACAACTGATTCACCAAGTCAGAAGTACAAAGAAGATTATATTAGACAACGGAACAATAGATTTATGAGGGTTGCTGTCGGTGCATCTCCAACTAGTGTGTTATCTCAAGCTGCAGTTGAAACGATTATAAATTCCTTGACACCTTACATCACAAGTCTATGTACATCAGAAAACTTGCAGGACTGTGAAGAAGCCGTATTGGAAATAGCGAGATTGTGGAAGGACTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAACCAACTGTCATAAGTGGTTTAGTGGAAATTCTCTCAGCTTCTCTTAATAGAGAAGTTCTGAGAAGATCGATATATATTCTTTCCGAACTAATTTTAGCAGATGAAAGAGTTGGAGAAACACTTAATAGTGTAGATTCTGATTTCGATTGCTTGGCTACTCTACTTAAGAATGGCTTGTTTGAGGCTGCACTTCTTATTTACCAACTACGGCCAGTTTTTGCTCAGCTTTCGGAACATGAACTTATACCCTCTCTTATCCAAGTAATCCAGAACAAAAATGAGGATGTAGATGGTTTTCAGTTATCTATAGACCCCGGAGATGCTTCCATAGCAATTCTTGAGCAAATTTTAATGGGAGGGGATGAATATAACAGGTCTGTCAATGCTTCAAGTGTTATCTCGGCAAATGGAATTCCAGCCATAGTAAAGTATTTGGACAGAATGGAAGGAAGGAGGTCTGTCATTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGATCTCAATAGCAAATAGAATTGAATTGTCGCCTATTCTTGAATTATTTCATGCTGGAAATGATAGTGTGAGAGGAATCTGTGTGGAGTTTCTCTCAGAATTGGTTCGATTGAATAGAAGGACGTTCAGCAATCAGATATTACAGATAATCAAAGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAACATCAAATTGCTGTTTCCAGTCTTCTTATTCAGCTGGATCTTTTGGTTGAACCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTCTCAAATAATCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATCGGACACGTCACTTCCTCAGGAAAGTCGTATACTGAAGCTTGGTTGCTGAAGGTTGCAGGATTTGATCAGCCTTACAATGTTTTAATGAAGGCCGAGCAATTGGGACACCATGACAATGATTTTATGGAAACAATGGAGGATGAAAAAAATGCCATGAAATCTTGGCAGAAAAGGGTAGCTTCTGTACTTTGCAATCACGAAAACGGCTCAATATTTCAAGCTTTGGAAGAATGCCTAAAGAGTAACTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACACACATGCTCTTTTCTCTACCTGATACTGGTGTAAGGGATATTGCTCGGAAATCCCTGCTCGAGGCACTTATAAATGTCCTCCAGTCATCCAAGAACCTAGAGGAAAAGATCTTGGCTACCCTAGCTTTGAAGTCTTTCATTAGTGATCCAACTGCTCATGAAGCACTTAGAGTTTATGCTAAAAGCATCTATAGAATCTTGAGGAAGCTGAAGAAATATTCAACAGTTGCAGCTGATATTTTGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTTGAGCTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTACTTCAATGGTCAGGTCTTGAGTGGACATGCTGATGGAACTATCAAGGTATGGGACGCAAGGAAGAGAATACCTCGAGTAATTCAAGAAACTCGTGAGCACAAAAAAGCTGTTACATCTCTTTGCTCTTCTGTTGATAGACTATACAGTTCTTCCTTGGACAAAACAATCCGGGTTTGGACGATTAAACCCGACGGGATTAAATGTATAGATGTTTACGACGTTAAGGAGGCAGTGTATGAGCTAGCAGCCAATGCTGAATTGGCATGCTATGTAACTCAAGGAACAGGAGTTTTTAATTGGTTAGACACTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTTGCTGTTGCCGGGGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTGACTTATCCAAATATACATCAACTTCATTCTTCACTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCATTCAAATTCATGATGATTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACTGCAGGAAAGATATTTTCACTTTCCACCAAAATGGTGGTGGGATCACTCTCGACTGGACTCGACATCCAACGTGCAGCCATCAACAGTGACTTTATATTTGCTGGTACAAAATTTGGCACCATTGAAGTTTGGCTGAAAGATAAGTTCACCCGAGTCGCTTCCATCAAAATGGCAGGCGGTCACACAAAAATTACATCATTAGTGTCAGATGTTGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTAGATTAA 4467 0.3819 MAGNFRFMMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDENGDKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQSCIFHALEMFIVDPFFARIDFAPELWKNLFLPHMSSIVGWYSEERHKLMMEVIPESSDFSYTADFDKVFNESLVFSMRPNQLDKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSTSSKKVIPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMATRRSNDGLNETTRENLTSNSNHSKGEKSSMWGAKESIIEEIEDDSDSEHYDASVDSDKINIFSPDLKTNIKDEDVEPNVYRSNQKDQMQSPNISPMESPRAARNHSSTNPHIHRKKESKFLRLLSNRFRGSTISDHSLSSSPDTSSDHIFNGDEEEAMVLNNIKRKNDSQTASVNQDIENNLVLNDSSHCESEDGYQSSTSFPKLGKLNIGSKPPKDFVCPITGQIFGDPVTLETGQTYERKAIQEWLGTGNTTCPITRQPLSANILPKTNYVLKRLIVSWKEQHPELAQEFSNSNTPRGSSCSPSAKDITMISTIQRTTDSPSQKYKEDYIRQRNNRFMRVAVGASPTSVLSQAAVETIINSLTPYITSLCTSENLQDCEEAVLEIARLWKDSKTDPQIHSYLSKPTVISGLVEILSASLNREVLRRSIYILSELILADERVGETLNSVDSDFDCLATLLKNGLFEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKNEDVDGFQLSIDPGDASIAILEQILMGGDEYNRSVNASSVISANGIPAIVKYLDRMEGRRSVISILLCCMQAEKSCKISIANRIELSPILELFHAGNDSVRGICVEFLSELVRLNRRTFSNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVSSLLIQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAWLLKVAGFDQPYNVLMKAEQLGHHDNDFMETMEDEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFSLPDTGVRDIARKSLLEALINVLQSSKNLEEKILATLALKSFISDPTAHEALRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYFNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSVDRLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYELAANAELACYVTQGTGVFNWLDTPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKYTSTSFFTGTRKLLGKQTIHSIQIHDDFLFACGSSVDATAGKIFSLSTKMVVGSLSTGLDIQRAAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDVDGMMLFVGSSDGKIQVWALD 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03914 1488 Gene3D - 656 1198 IPR011989 -
Tsu01g03914 1488 SUPERFAMILY ARM repeat 653 1188 IPR016024 -
Tsu01g03914 1488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1454 1488 - -
Tsu01g03914 1488 MobiDBLite consensus disorder prediction 371 417 - -
Tsu01g03914 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1488 - -
Tsu01g03914 1488 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Tsu01g03914 1488 Gene3D - 1199 1304 IPR015943 GO:0005515
Tsu01g03914 1488 SUPERFAMILY RING/U-box 514 587 - -
Tsu01g03914 1488 SUPERFAMILY WD40 repeat-like 1206 1484 IPR036322 GO:0005515
Tsu01g03914 1488 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Tsu01g03914 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1488 - -
Tsu01g03914 1488 Gene3D - 1318 1488 IPR015943 GO:0005515
Tsu01g03914 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1454 1488 IPR001680 GO:0005515
Tsu01g03914 1488 MobiDBLite consensus disorder prediction 298 328 - -
Tsu01g03914 1488 Pfam WD domain, G-beta repeat 1221 1237 IPR001680 GO:0005515
Tsu01g03914 1488 Pfam WD domain, G-beta repeat 1456 1485 IPR001680 GO:0005515
Tsu01g03914 1488 Pfam WD domain, G-beta repeat 1248 1278 IPR001680 GO:0005515
Tsu01g03914 1488 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Tsu01g03914 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1249 1281 IPR001680 GO:0005515
Tsu01g03914 1488 SMART WD40_4 1199 1237 IPR001680 GO:0005515
Tsu01g03914 1488 SMART WD40_4 1242 1279 IPR001680 GO:0005515
Tsu01g03914 1488 SMART WD40_4 1445 1486 IPR001680 GO:0005515
Tsu01g03914 1488 MobiDBLite consensus disorder prediction 297 333 - -
Tsu01g03914 1488 CDD RING-Ubox_PUB 519 561 IPR045210 -
Tsu01g03914 1488 MobiDBLite consensus disorder prediction 382 407 - -
Tsu01g03914 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1224 1237 IPR001680 GO:0005515
Tsu01g03914 1488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 597 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03914 Tsu-Chr1 46830865 46837702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03914 516 912 U-box Gene Family AT1G23030 24.286 7.54e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03914 - - gmx:100776142 2419.04