Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03908 ATGACAACATCAGAAGAAACTTCAAGTCTGAAATTATTGAGCCAACATCTTTTAGAGGATATATCAGACTCCTTTTTCACCAATCTCACTTCTGTAAAACTTGAatacacatcatcatcatcacgaTCATCAGAAATTGATTTGGATTCATATTTTTCAGAACAAAACAGTTTTCTTGAAATCCTTGGTTTTGAAGCTGATACAAAATTCATTGACTTCACTTCTCATGATAAGGTACAAAACATGAAGGAAGAAAGACCCTTTGAGGAAacacagaagaagaagaagtcaAATTTAGCAGAATCAATGGTGTTGGAGAAGAAGGAACAAAGATGTTATGGAGGAAAACATTATAGAGGAGTAAGGAGAAGGCCATGGGGTAAATTTGCTGCAGAGATTCGTGACCCTTCAAATAAAGGAAGCAGGGTTTGGTTAGGAACATTTAACAATGAGATTGATGCTGCTAAGGCTTATGATTGTGCAGCTTTTAGAATGAGGGGTCAAAAAGCTATATTGAATTTTCCTTTGGAAGCTGGTAAAGATAATCCAAAGCCTAATAACAGTGTCAGTGGAAGGAAAAGGAGAATACATCAGAGAGATGCTGCTACAAGTTCAAGTTAA 621 0.3349 MTTSEETSSLKLLSQHLLEDISDSFFTNLTSVKLEYTSSSSRSSEIDLDSYFSEQNSFLEILGFEADTKFIDFTSHDKVQNMKEERPFEETQKKKKSNLAESMVLEKKEQRCYGGKHYRGVRRRPWGKFAAEIRDPSNKGSRVWLGTFNNEIDAAKAYDCAAFRMRGQKAILNFPLEAGKDNPKPNNSVSGRKRRIHQRDAATSSS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03908 206 CDD AP2 116 175 IPR001471 GO:0003700|GO:0006355
Tsu01g03908 206 SUPERFAMILY DNA-binding domain 117 177 IPR016177 GO:0003677
Tsu01g03908 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 198 - -
Tsu01g03908 206 Gene3D AP2/ERF domain 116 177 IPR036955 GO:0003700|GO:0006355
Tsu01g03908 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 198 - -
Tsu01g03908 206 SMART rav1_2 117 181 IPR001471 GO:0003700|GO:0006355
Tsu01g03908 206 ProSiteProfiles AP2/ERF domain profile. 117 175 IPR001471 GO:0003700|GO:0006355
Tsu01g03908 206 Pfam AP2 domain 117 167 IPR001471 GO:0003700|GO:0006355
Tsu01g03908 206 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Tsu01g03908 206 PRINTS Ethylene responsive element binding protein signature 157 177 IPR001471 GO:0003700|GO:0006355
Tsu01g03908 206 MobiDBLite consensus disorder prediction 175 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03908 Tsu-Chr1 46796492 46797112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03908 1 195 AP2-EREBP Transcription Factor Family AT5G07580 41.063 4.85e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g03908 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03908 - - gmx:100499732 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03908 01 46796492 46797112 Tsu01g03908 01 46796492 46797112 ECH