Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03903 ATGGACAAAGATATGTTACATTGGTTGGAACaacaaatggaagaagagcaacaCACAACCAATGCAGCATGGGCCAATACAACTAGTGCCAATAACAATGGTTTGGAAGTTGGTTGGTACATGAACAATATACCACCTCATAGTGAAGAATTGATCCCAAATCTTCAAGTTCACACCCAACAACAAAACGATGTTTGTCCATTAGATCCAAACACTTTTGGTCTTATGCAACCTTTGGGTTCATCCTCTTTGTTATCACCACCTAAATCCAACTTCTCCCATTTACTTAATACCAACTACAATATGGACACCACCACCGTCGTCAACAACAATGACAATAACAATCTATTTGGTAGTGTTTTCAATTTGGAATCCCAAAGACCTTCAAAATCATCGATTTTGAGTAAGACTGAGATCTCGAGGCCTCTCACAAATAAATTTGACTCATTGCCGATTTCGCAATTTGCCTCAACATGGTTGAAGGAATTTGGGAAGATGACGGAGAAAGAGGGAAATGAGGAGGTTGAGGGAGGATTGAATGATGACTCTAATGAGGTGGTCAATGTTGCGAATATGGAGAATGATGGTGGAAATAATTATAATGCTGATAACAATGTTGgtgacaacaataataataacattgtgtgtaataatgatgatggtgatgaaaaTCGTCATCATGCTGACGGGGGGCGAAAAGGGAAGAAGAATGAAAGGACAACAAAAAGTCTCATAGCTGAGAGACGGCGAAGGAAGAAACTTAGTGATAGAATGCACAAGCTTCGTTCTATTGTGCCAAATATAAGCAAGatgGACAAAGCTTCAATACTTGGAGATGCTGCTGACTACTTGAAAGagttacaacaaaaaattaataatcttCAAATTGAATTAGAGTCAAGCTCTCCTGGATTGTTCACTGTGGCACCCCCCACACCAACTGTCCTTGTTCCGGTTAAAGAGGAATTGTGTCATAGCAATATGTCAAGCCCTAAAAACCAATCAACAAAgGTAGAGGTTAAAGAAAGGGAAGGAGGAACTGTTGACATCCATGTGTCTTGCACCCACAAATCAGATATTTTGCTTTCTACTATGAAGGCATTGGATAGCCTTGGATTGGATGTAGATCAAGCAGTCATAAATTGTTTCAATGGTTTTTCTATAGATGTGTTCAAAGCTAAGCAATACAAAGAAGGCCAGAAAGTGCTTCCTGAGCAAATTAAAGCAGTATTGTTGAATGCATTGAGTTTCCATGGCATGCTTCTCCATTGCAAATTGAAAACTGAGAGAGAGATGGAGAAGATGAAAATAGAAGAGGTTCAGTCGACGACAAAGAAACAGCGTGTTGCTACTCACACACACATAAAAGGCCTAGGTCTTGAGGTTACTGGAAAAGCACTGGCTTTTGCTTCTGGGTTTGTGGGACAAGCTGAGGCAAGAGAAGCGTGTGGCCTTGTGGTTGATATGATACGGCAAAAGAAGATGGCTGGCAAGGCACTCCTTCTCGCCGGGCCACCCGGAACCGGAAAGACTGCATTAGCACTTGGGATATGTCAGGAGCTTGGGACCAAGGTTCCTTTCTGCCCAATGGTTGGTTCCGAAGTATACTCAACGGAAGTAAAGAAGACTGAGGTTCTTATGGAAAATTTTCGACGGGCTATTGGTCTACGTATTAAGGAAAATAAACAAGTATATGAAGGCGAGGTGACTGAGCTCTCTCCCGAAGAAACTGACAGTATAACAGGAGGTTATGGTAAAAGTATCAGCCATGTGATAATTGGATTGAAGACGGTGAAAGGAACCAAGCAACTAAAGTTGGACCCAACAATATATGATGCCTTGATTAAGGAAAAGGTAGCTGTTGGGGATGTTATATACATTGAGGCAAATAGTGGGGCTGTGAAAAGGGTTGGCCGAAGTGATGCTTTTGCTACTGAGTTTGACCTTGAAGCAGAAGAGTATGTTCCACTTCCCAAGGGAGAGGTTCACAAGAAAAAAGAGATTGTTCAGgATGTAACCCTACACGATCTGGATGCTGCCAATGCGCGACCTCAGGGTGGGCAAGATATATTGTCTCTAATGGGCCAGATGATGAAACCTAGAAAAACAGAAATCACCGACAAGTTGAGACAAGAAATTAATAAGGTTGTCAACCGATATATTGAGGAAGGTGTTGCAGAACTTGTCCCCGGGGTTCTATTTATTGATGAGGTGCATATGCTAGATATGGAGTGTTTTTCCTATCTTAATCGTGCTTTAGAGAGTTCACTGTCTCCAATAGTAATCTTTGCCACAAATAGAGGAATATGCACCGTAAGAGGGACCGATATGACCAGTCCTCATGGCATACCTGTTGACCTATTGGATCGATTGGTGATCATTCGAACACAAACCTATGGTCCGGCTGAAATAATACAGATTCTAGCTATCCGAGCTCAAGTGGAGGAACTGGTTGTGGACGAGGAAAGTTTAGCTTTCCTAGGGGAGATTGGACAACAGACATCTTTAAGGCACGCAGTTCAGCTTTTATCACCTGCCAGCGTTGTTGCCAAGATAAATGGCCGAGACAACATCTGCAAGGCGGATCTTGAAGAAATTTGTTCACTATATTTGGATGCCAAATCATCAGCCAAGCTACTTCAAGAGCAGCAAGAAAAATACATAACATAA 2670 0.4052 MDKDMLHWLEQQMEEEQHTTNAAWANTTSANNNGLEVGWYMNNIPPHSEELIPNLQVHTQQQNDVCPLDPNTFGLMQPLGSSSLLSPPKSNFSHLLNTNYNMDTTTVVNNNDNNNLFGSVFNLESQRPSKSSILSKTEISRPLTNKFDSLPISQFASTWLKEFGKMTEKEGNEEVEGGLNDDSNEVVNVANMENDGGNNYNADNNVGDNNNNNIVCNNDDGDENRHHADGGRKGKKNERTTKSLIAERRRRKKLSDRMHKLRSIVPNISKMDKASILGDAADYLKELQQKINNLQIELESSSPGLFTVAPPTPTVLVPVKEELCHSNMSSPKNQSTKVEVKEREGGTVDIHVSCTHKSDILLSTMKALDSLGLDVDQAVINCFNGFSIDVFKAKQYKEGQKVLPEQIKAVLLNALSFHGMLLHCKLKTEREMEKMKIEEVQSTTKKQRVATHTHIKGLGLEVTGKALAFASGFVGQAEAREACGLVVDMIRQKKMAGKALLLAGPPGTGKTALALGICQELGTKVPFCPMVGSEVYSTEVKKTEVLMENFRRAIGLRIKENKQVYEGEVTELSPEETDSITGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIEEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICTVRGTDMTSPHGIPVDLLDRLVIIRTQTYGPAEIIQILAIRAQVEELVVDEESLAFLGEIGQQTSLRHAVQLLSPASVVAKINGRDNICKADLEEICSLYLDAKSSAKLLQEQQEKYIT 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03903 889 MobiDBLite consensus disorder prediction 219 251 - -
Tsu01g03903 889 Pfam TIP49 P-loop domain 448 799 IPR010339 GO:0005524
Tsu01g03903 889 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 287 IPR011598 GO:0046983
Tsu01g03903 889 Pfam Helix-loop-helix DNA-binding domain 245 288 IPR011598 GO:0046983
Tsu01g03903 889 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 301 IPR036638 GO:0046983
Tsu01g03903 889 PANTHER RUVB-LIKE HELICASE 434 888 - -
Tsu01g03903 889 MobiDBLite consensus disorder prediction 193 255 - -
Tsu01g03903 889 MobiDBLite consensus disorder prediction 193 218 - -
Tsu01g03903 889 SMART AAA_5 496 798 IPR003593 -
Tsu01g03903 889 PANTHER RUVB-RELATED REPTIN AND PONTIN 434 888 IPR027238 GO:0008094
Tsu01g03903 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 869 IPR027417 -
Tsu01g03903 889 Gene3D - 553 678 IPR042487 -
Tsu01g03903 889 Pfam TIP49 AAA-lid domain 807 872 IPR041048 -
Tsu01g03903 889 SMART finulus 244 293 IPR011598 GO:0046983
Tsu01g03903 889 Coils Coil 277 297 - -
Tsu01g03903 889 Gene3D - 444 796 IPR027417 -
Tsu01g03903 889 CDD AAA 474 564 - -
Tsu01g03903 889 Gene3D - 229 302 IPR036638 GO:0046983
Tsu01g03903 889 Gene3D - 799 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03903 Tsu-Chr1 46766856 46781323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03903 241 394 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 60.494 1.85e-54 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g03903 TIP49 1.3e-167 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03903 K04499 - gmx:100809596 857.44