Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03896 ATGGAAGATACATTGCCTAAGATGGAAATCTTTACACAAAAGGAATTACCAACTTGTTTGCAAGAAATAGTAACAACAGAATCCAAGTATTTGGAAGATACAATTATAAGAAGAGACTCTTACTCTCTCACTTCTTCATCAACATTATCACCACAAAAAAATTTCTGGTGTACTTCAAATTCTACTTCAATGAAACAAGAGGTAGTACCTTTAACCACTTTAGTTAATCAAATGCCTTCAAATTTCAATGATCATCATAATGTCATAGCCTCAGATATAAAACATAGTTTTGTTCCTCTAAATCTTCTGGAAACTCTCCCGGCGTTAACCGTAACTCCAGTGTCTGATGAGCCAACAGGATCTTTAGCTTCTTCTGCTACTACACCGAAATATCCGAATTTGACTTTGTTTTTGCAGGAACCATCTATGCTATACTCATCAACATCACATATCAAAAGTAGTGAAATCATCTCAACAACTTCATATCCTACATATCCTATGTCACAATTTGGCCTAACTCAGTATCAACAAAACAATGGTTATGGATTTTATGATTCAAACAAAATGAATAAGAATATGATGACAAACTTGCAATCCAAGTCTTTCAATGAGAATTGGTTGAGTACTACAAAGACTCAACCTATGAAGTATGGTGCAAGAGGGAAGCTTTTCAAAGGGGTGAGGCAAAGACATTGGGGGAAATGGGTTGCTGAAATTAGGCTACCAAGAAATAGGACTAGAGTTTGGTTAGGGACATTTGATACAGCTGAAGATGCTGCAATTGCATATGATACAGCAGCATATATATTAAGAGGTGAATGTGCTCAGTTAAATTTTCCAGATCTTAAGCATGTGATTCAAGCCAATTCATTGAATGGAACAACTGCTTCACTTGTTGAGGCAAAACTTCAAGCAATATCACAACAAGGTGTTTCTTCTTCTCATAGAAAACAAAGGTCAAATAATAAGCACATTGATGAGGTTAAAAGTAGCAAGGAAGAAACTGTGAAGGAATTGAAGGTTGGAGATGACACAAATGACAGAAGCAAAAGTATGCAGAATGAGATATGTGATGTGGAAACTGTTCAGTTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGATTCATGA 1155 0.3541 MEDTLPKMEIFTQKELPTCLQEIVTTESKYLEDTIIRRDSYSLTSSSTLSPQKNFWCTSNSTSMKQEVVPLTTLVNQMPSNFNDHHNVIASDIKHSFVPLNLLETLPALTVTPVSDEPTGSLASSATTPKYPNLTLFLQEPSMLYSSTSHIKSSEIISTTSYPTYPMSQFGLTQYQQNNGYGFYDSNKMNKNMMTNLQSKSFNENWLSTTKTQPMKYGARGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGECAQLNFPDLKHVIQANSLNGTTASLVEAKLQAISQQGVSSSHRKQRSNNKHIDEVKSSKEETVKELKVGDDTNDRSKSMQNEICDVETVQLSRMPSLDMDIIWNELLVSDS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03896 384 PRINTS Ethylene responsive element binding protein signature 224 235 IPR001471 GO:0003700|GO:0006355
Tsu01g03896 384 PRINTS Ethylene responsive element binding protein signature 246 262 IPR001471 GO:0003700|GO:0006355
Tsu01g03896 384 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 383 - -
Tsu01g03896 384 CDD AP2 222 282 IPR001471 GO:0003700|GO:0006355
Tsu01g03896 384 Gene3D AP2/ERF domain 223 281 IPR036955 GO:0003700|GO:0006355
Tsu01g03896 384 SUPERFAMILY DNA-binding domain 223 281 IPR016177 GO:0003677
Tsu01g03896 384 MobiDBLite consensus disorder prediction 319 354 - -
Tsu01g03896 384 Pfam AP2 domain 224 272 IPR001471 GO:0003700|GO:0006355
Tsu01g03896 384 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 9 383 - -
Tsu01g03896 384 SMART rav1_2 223 286 IPR001471 GO:0003700|GO:0006355
Tsu01g03896 384 ProSiteProfiles AP2/ERF domain profile. 223 280 IPR001471 GO:0003700|GO:0006355
Tsu01g03896 384 MobiDBLite consensus disorder prediction 309 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03896 Tsu-Chr1 46702251 46703405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03896 1 379 AP2-EREBP Transcription Factor Family AT4G13620 39.000 1.12e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g03896 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03896 - - cam:101510582 468.774