LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g03896	ATGGAAGATACATTGCCTAAGATGGAAATCTTTACACAAAAGGAATTACCAACTTGTTTGCAAGAAATAGTAACAACAGAATCCAAGTATTTGGAAGATACAATTATAAGAAGAGACTCTTACTCTCTCACTTCTTCATCAACATTATCACCACAAAAAAATTTCTGGTGTACTTCAAATTCTACTTCAATGAAACAAGAGGTAGTACCTTTAACCACTTTAGTTAATCAAATGCCTTCAAATTTCAATGATCATCATAATGTCATAGCCTCAGATATAAAACATAGTTTTGTTCCTCTAAATCTTCTGGAAACTCTCCCGGCGTTAACCGTAACTCCAGTGTCTGATGAGCCAACAGGATCTTTAGCTTCTTCTGCTACTACACCGAAATATCCGAATTTGACTTTGTTTTTGCAGGAACCATCTATGCTATACTCATCAACATCACATATCAAAAGTAGTGAAATCATCTCAACAACTTCATATCCTACATATCCTATGTCACAATTTGGCCTAACTCAGTATCAACAAAACAATGGTTATGGATTTTATGATTCAAACAAAATGAATAAGAATATGATGACAAACTTGCAATCCAAGTCTTTCAATGAGAATTGGTTGAGTACTACAAAGACTCAACCTATGAAGTATGGTGCAAGAGGGAAGCTTTTCAAAGGGGTGAGGCAAAGACATTGGGGGAAATGGGTTGCTGAAATTAGGCTACCAAGAAATAGGACTAGAGTTTGGTTAGGGACATTTGATACAGCTGAAGATGCTGCAATTGCATATGATACAGCAGCATATATATTAAGAGGTGAATGTGCTCAGTTAAATTTTCCAGATCTTAAGCATGTGATTCAAGCCAATTCATTGAATGGAACAACTGCTTCACTTGTTGAGGCAAAACTTCAAGCAATATCACAACAAGGTGTTTCTTCTTCTCATAGAAAACAAAGGTCAAATAATAAGCACATTGATGAGGTTAAAAGTAGCAAGGAAGAAACTGTGAAGGAATTGAAGGTTGGAGATGACACAAATGACAGAAGCAAAAGTATGCAGAATGAGATATGTGATGTGGAAACTGTTCAGTTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGATTCATGA	1155	0.3541	MEDTLPKMEIFTQKELPTCLQEIVTTESKYLEDTIIRRDSYSLTSSSTLSPQKNFWCTSNSTSMKQEVVPLTTLVNQMPSNFNDHHNVIASDIKHSFVPLNLLETLPALTVTPVSDEPTGSLASSATTPKYPNLTLFLQEPSMLYSSTSHIKSSEIISTTSYPTYPMSQFGLTQYQQNNGYGFYDSNKMNKNMMTNLQSKSFNENWLSTTKTQPMKYGARGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGECAQLNFPDLKHVIQANSLNGTTASLVEAKLQAISQQGVSSSHRKQRSNNKHIDEVKSSKEETVKELKVGDDTNDRSKSMQNEICDVETVQLSRMPSLDMDIIWNELLVSDS	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g03896	384	PRINTS	Ethylene responsive element binding protein signature	224	235	IPR001471	GO:0003700\|GO:0006355
	Tsu01g03896	384	PRINTS	Ethylene responsive element binding protein signature	246	262	IPR001471	GO:0003700\|GO:0006355
	Tsu01g03896	384	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	9	383	-	-
	Tsu01g03896	384	CDD	AP2	222	282	IPR001471	GO:0003700\|GO:0006355
	Tsu01g03896	384	Gene3D	AP2/ERF domain	223	281	IPR036955	GO:0003700\|GO:0006355
	Tsu01g03896	384	SUPERFAMILY	DNA-binding domain	223	281	IPR016177	GO:0003677
	Tsu01g03896	384	MobiDBLite	consensus disorder prediction	319	354	-	-
	Tsu01g03896	384	Pfam	AP2 domain	224	272	IPR001471	GO:0003700\|GO:0006355
	Tsu01g03896	384	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062	9	383	-	-
	Tsu01g03896	384	SMART	rav1_2	223	286	IPR001471	GO:0003700\|GO:0006355
	Tsu01g03896	384	ProSiteProfiles	AP2/ERF domain profile.	223	280	IPR001471	GO:0003700\|GO:0006355
	Tsu01g03896	384	MobiDBLite	consensus disorder prediction	309	354	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g03896	Tsu-Chr1	46702251	46703405	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g03896	1	379	AP2-EREBP Transcription Factor Family	AT4G13620	39.000	1.12e-68	219

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Tsu01g03896		AP2	1.8e-12	CL0081