Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03891 ATGTCGGCGGCACAACAAGTTGTTAAGCGTGCCAAATATAAAACCACCGTCAAAGATCCCGGTACTCCCGGCGTCATCAAATTGACTCAAGAAAAGCTTATTTTCAAGCCTAATGATCCAACATCAAAAAATAAGCTGGAAGTTGATTTCAGATTAATTAAAAGTCATAAGCACACCAAAGAGGGATCAAACAAACCACCGTGGCTTAACCTCGTACATTCTcagGGAAGTTACATCTTTGAGTTTGAAAGCTTTCCAGATCTACATGTTTGCCGGGAATTGGTTGGTATTGCCCTTAGCAAGCATGTAGAAACCACAAAAGTTGTTTCTGATGAACAGCTTAGCGCTGCCGAAATGACACTTAGGATTAAGCTATTGCAAGAAAATAGCAAGTTGCAGAAGCTTCATAAGGAACTTGTGGCTAGTGGTAAGCTTACAGAATCAGAATTTTGGGCTACGAAGAAGAAATTGCTCGACCAAGATGAAAGCAGAAAGTTAAAACAAAGGATtggatttaaaaattctttgatCTTCGACACAAAGCCTACTAGTGATGGTCGGatAAACCAAGTTAAATTTCAATTGACTCCTGAGATAAAGTATCAGATTTTTGCCCTCAAGCCAGCAGTTCACCAGGCATTCCTCAATTTTGTACCCAGTAAGATGAGCGAGGTAGATTTCTGGAATAAATACTTCAAAGCTGAATATATCCATAGTACCAAAAATACTATTGCGGCAGCTGCCGAGGCTGCTGAAGATGAGGATCTCGCTGTTTTTTTGAAAGATGACGAGATATTAGAAAATGAAGCTCGAAAGAAGGTTCGACGGGTCGATCCAACTTTAGACATGGAAGCAGACCAAGGAGACGATTACACTCATCTTCCTGATCATGGGATCTTCCGTGATGGTAGCAAGGAAACATCTGAAGCTCAAAATACTCTGTATCGGAGAACGTTGTTGCAAGATCTCAACAGACAAAGTGAGGTGGTTCTTGAAGGAAAAACTTTAgATATAGATACGGAGCATCCAAGAACAGTGGCAGAAGTGCTTGCTCGGAGAAAACAGGAATCTGATGGGGTTATAGAGGAGGAGAGGCGAAACAGAATTTCTAAGATGGCCCAGATTGAGGATCTTCAGGCACAAGATGATCATCCTTTTGCACCACTCAGTATCAAGGATCCTCGTGACTATTTTGATTCTCAACAAGCTAATGCAGTAAAAACTTTGGATGATTCCCTAGCTGGCAAGGAGACGTTAAGATGCAATTTGAGTTCTGAGCAAGTCTATGGCTCTTTGAGGAAGTCCATATCTAACATCAAAACTAAGGGATTAAAGGACCCTCTATTGAGTCCTGAGGTTGCTTTAAAGGTCCTTAGTGGATTGACGAAAAATATCTCAAGCACCAAATCAAATCTCGGAAAAAGTTCACAGGAGAGTGTCCTCGATATATTACCCAGCACAATTAAGGAGAAACTACTAGATcATTGGGTTTGCAGTCAGGAATTACTGAGGCACTTTTGGTCTTCCTATCCAGTAACAACACAAAGCCTTGTTAATAAGGCCAGAAGACTGAAAGATGCCATATCACAAATAGATTCCAAACTTGAGGAAATAAAGGTATCTGCAAAGTCAGACCTGCGGCACCAGGTTTCCCTTGTTGTCCATCCAATGCAGCAGGCTTTGGAAGCTGCCTTGTTACATTACGATGCTgacgaaaagaaaagaagtGCTAAAGTGCCAAAGCCAAATGGTTATGTTTAG 1761 0.4037 MSAAQQVVKRAKYKTTVKDPGTPGVIKLTQEKLIFKPNDPTSKNKLEVDFRLIKSHKHTKEGSNKPPWLNLVHSQGSYIFEFESFPDLHVCRELVGIALSKHVETTKVVSDEQLSAAEMTLRIKLLQENSKLQKLHKELVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYIHSTKNTIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDTEHPRTVAEVLARRKQESDGVIEEERRNRISKMAQIEDLQAQDDHPFAPLSIKDPRDYFDSQQANAVKTLDDSLAGKETLRCNLSSEQVYGSLRKSISNIKTKGLKDPLLSPEVALKVLSGLTKNISSTKSNLGKSSQESVLDILPSTIKEKLLDHWVCSQELLRHFWSSYPVTTQSLVNKARRLKDAISQIDSKLEEIKVSAKSDLRHQVSLVVHPMQQALEAALLHYDADEKKRSAKVPKPNGYV 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03891 586 MobiDBLite consensus disorder prediction 284 304 - -
Tsu01g03891 586 ProSiteProfiles BSD domain profile. 104 162 IPR005607 -
Tsu01g03891 586 MobiDBLite consensus disorder prediction 284 307 - -
Tsu01g03891 586 Pfam BSD domain 189 240 IPR005607 -
Tsu01g03891 586 SUPERFAMILY BSD domain-like 113 157 IPR035925 -
Tsu01g03891 586 SMART wurzfinal6 187 239 IPR005607 -
Tsu01g03891 586 SMART wurzfinal6 108 162 IPR005607 -
Tsu01g03891 586 Pfam TFIIH p62 subunit, N-terminal domain 22 84 IPR013876 -
Tsu01g03891 586 Gene3D - 116 162 - -
Tsu01g03891 586 SUPERFAMILY BSD domain-like 187 240 IPR035925 -
Tsu01g03891 586 Coils Coil 361 381 - -
Tsu01g03891 586 ProSiteProfiles BSD domain profile. 187 239 IPR005607 -
Tsu01g03891 586 SUPERFAMILY PH domain-like 8 102 - -
Tsu01g03891 586 PANTHER TRANSCRIPTION INITIATION FACTOR IIH-RELATED 5 577 IPR027079 GO:0000439|GO:0006289|GO:0006351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BSD Tsu01g03891 BSD 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03891 K03141 - gmx:100776016 964.14