Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03885 ATGAGTAATGAGGATCATGGAATTTCAGGCAATCGATATACGGGTATAGTAAGTGTTGGGTTTAGCGACATAACCCCTTGTGATAAAGATGATGAAGATAATGTATGTCATCAGACCGGTGAAGAATTTTCTTCCAAGTTCTTACGCGATCGGGTTGCTTTAAGGAAGTTTCCTGTCATACCTGATGTAGAGCAGCGCCTGCCAAACATATTGAACTTCAATAATAACAATTATCAAGTGATCTACGaggatcaaaatcaaaatcatgtCCTTGGTATAGGGAGAATGGATTCTGATAGCAATTTGGATTTGTCAGAGATTGCTTCAGCTAGAGGCTATGTTGTTGAAGCTGACAACAGGGCTTATCATAATAATTTGAGCAAATACCAGTGTGAACTTGGTGGTATAAGACAAGCATCGAGTGCATTTTCCAGACAATCATCAAGTAGGTTTTCTGACGGATGCGATCAAGTTACCTCGGGACCAAATACTCCGCCTATTTATGCCGTTGAGTCTCCTTTTTCAGGCCATCCTTATGGAACAGTATTCTCAGAAGGTTCCTTCTTCAAGAAAATAAAGTTTCTATGTAGTTTTGGAGGTCGAATACTGCCAAGGCCAAATGACGGAAAACTCAGATATGTGGGTGGAGAGACGCGGATTATATCGATCAGGAGGAACATCACGCACGAAGAACTTACGGAGAAGACTTCTGGTATTtgcaatcaaactcacattatCAAATACCAGCTTCCTGGTGAGGATCTTGATGCTCTTATATCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAAGAATATGAAGAGCTTGAAAGAGCTGGAGGATCTCAACGACTTAGGATTTTTCTTATACCTTCAAATGAACCTGAGAGTCCAAGCTCTAATGATTCAAGAGTCAATCAGCAAAGTGATGTTGATTACCATTATGTTGTTGCTGTTAATGGTATACTAGATCGAAGTCCGCAAAAGAATCATGGTGGACTAAGTCTGGCAAGCCAATTTGCAAATACCTCTGATTACAACAATCCACATTTCCACAGGGAATCATCCACATATGCATTTGTTTCAGATGTAAACGATTGCAACCCAACCTCTTCAAATTTGGCAGACATAATGTCAAAACCAGGTCCATTTTTAGCATCACTTAAGGTAGGGGGCAAGTCATTTAATCAAAGGCATCTATCTCCCATTTCTGTGCAGCCTAAAGATCAAACAAATTCTAATGTTCAGTTATTTACGGATCAAtcatataatattgttaatgaAAACATTATACCCTATGGCCTGGAAAAAATTCCACGTGACAACTCTTTGTATGTAGATAATACCAGTTATGCTGATCCCATTACATATTATAACAATCTTACCCAAGGGTCTCCATGTGTGAACTATCATCCTAGTAATCAATACACATTGGAGTCTGACCACCAAGACAGGAAGTCTAATGTTGAATTTAATTTTCACAGACGAACCAATAGTAAAGAATTTGTCTCTCCTGCAATTTGTAATCAAACGGATATGATATTTGAGAGACCTTTAGTTAATAATGAAGGTTCATACCATTTTAACAATATTGTCTCTCATCCTCATGAGTCATCGGGTGTATTTTCGGTGTCTGGCGATAGGGATGTATCTCAATACAAAATGTTGCATACTCTTTCCGAGTCAACGCTTCTGGAGAATAATGAAAATTACAAAGGTCACATGCAATTTCCATTTAATGTTGAGAGAGACAAATTGTCATCATTGGAAACTTCAAGTTCTTTGGAAGAATGTTCAATACAGCCAGGAGAGATAAATGATGGGAGAGAACATCTGGCTTTACATCAAAAACCGCCCACTTTTGGAATGACTGATAGTTGCAAGAGATCGTCAGAAACTGGTAGAGAGAAATTACAACATGCAAATAAAAGTGTTGATTGGATCGATGAAAAAGTTGGATCTATGCCACAACATTTACCGTACATCTACTACCAACATGGTGCTTGCACATCTTCACCAGACTTACATAGTAGTGAATGCAATGCATCTGCTGCACCATTTATCACTTCACAATCTACTAGAAGCATTGAAGAGCAACCACATGGTATACCATTAGACACAATTGCTTCTGAGTTTTCTATGAGGAGCCAAAATTCATCAATGCATCGCCAATTTATTGTGTCGGAGACAAAATATGGTCATCCACCTCCCCCTGACTCTTTCGAGTTACGACCTACTAACTCCCTAATCGTCACAGAGTCTGTACTACCAATCTCATATCCAGATATGGTTTATTCTTCACTAAGAGAGGTTGATGTCCCTGGTGATGATCTTGCATACTACCAGAAccaaaaggaagaaaatataGTCAATGACAAACAATCTCATGAATATATTGATGAATTTTGCATCAACAAGCCAGAATCAACAACAGTTGTCACAGAGCAAATTGATTATATTTCTTCAGGTATCCGGTCATGCTTACAAGTTGTCTCAAATATAGATAAAGAGGACAAAGTTGAACATACTTCTCTTACAAAGACAGGGGTAGTGTCTGTTAATCATGAATCTGAAAGTAAGCTTGCAAAAGCTGATAGTCGAAACTTCAATAGGCCTATCGGTGATTCAGAAACTGCTGAAACAGAGTCTGAATTGTATGGTTTACAGattattGAGAATGGTGATCTCGAAGAACTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGCAAATGGAGAGGAACCGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCGCTGGTAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAAGCAAAGATCCTGTCAACTCTTCACCATCCAAATGTGGTGGCATTTTACGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACCGTAACAGAATACATGTTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGATCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGAATGGAATATTtgcatttgaaaaatattgttcaTTTCGATTTGAAGTGTGATAATTTACTTGTCAATTTGGGCGATCCTGAACGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAACGCAACACACTTGTTTCGGGTGGTGTCAGAGGGACTCTCCCTTGGATGGCACCTGAATTATTGGATGGCAACAGTTGTAGAGTATCTGAGAAGGTTGATATTTTCTCATTTGGTATAGCAATGTGGGAAATCTTGACCGGGGAAGAACCGTACGCTAATATGCATTGTGGTGCCATCATAGGAGGTATTGTCAGTAACACGCTCAGGCCATCTATTCCGAAACAATGTGATTCCGAGTGGAAAAAGTTGATGGAAGAATGTTGGAGCCCTGATCCAGAAGCCAGACCATCTTTCACAGAAGTTAAAAATAGACTCCGCAGCATGTCAGCGGCACTGCAAAAAAAGAGACCTAACgttttgcaaacaaccAAAAAACCCACACCGATTAGGGTTTTCGGACAACGATCAATTGCTTCAACCTTTCGCACTCTTCCACCTAATTCCTCTCGCGATTCCGAATCAAGTTCGAGAAATCAATCACCCCAAAAAAGCAAGCCCGCTCATCTCTCGCTTTCACACTTCCTGGATCGAAAACTGCACAAATCTCCCCCACTCACTCAAAAAGTTCcgGGGAAATCGACGCCTTTTGCATCTCCTCTGGGTTTGAGGATACCAACAAGTGAAGAGGTTGGAAGCGTCAAGCAAaatgaagaagagagaaagggTGCAGCCGCCAATGATAAGGTTATTTTGGGAATGTTCAAACATActgaagaagagagaaaaaatgactTTGTTATTCCATTGGATGTTGATGAGTTAGAAAATTCAGTGGCAGATGATGTTCAACAATCAAGGAAAAGGAAAAACCCATTTGAAGGTGGACATGACAACCAAACTGTTCAAAAGCATGTGGTAGTTCTTGGAGGTGAATCAAGGTCGAAGCCAAAAATGCTGATGGAAACTGACATCAACGGCAAAAAGCAAAAACCTTATAATCACTATGCAAATGGTCACGGCTGGTGGGATGACGACATGGAAGGTGTTGATAATGAGGCATTGGGGGTCAGTGAAGTATGGGAGGGGGTGGGATCCACCACACTTGGAGGTATAGTAGATTGGCATTGA 4233 0.3898 MSNEDHGISGNRYTGIVSVGFSDITPCDKDDEDNVCHQTGEEFSSKFLRDRVALRKFPVIPDVEQRLPNILNFNNNNYQVIYEDQNQNHVLGIGRMDSDSNLDLSEIASARGYVVEADNRAYHNNLSKYQCELGGIRQASSAFSRQSSSRFSDGCDQVTSGPNTPPIYAVESPFSGHPYGTVFSEGSFFKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRRNITHEELTEKTSGICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNEPESPSSNDSRVNQQSDVDYHYVVAVNGILDRSPQKNHGGLSLASQFANTSDYNNPHFHRESSTYAFVSDVNDCNPTSSNLADIMSKPGPFLASLKVGGKSFNQRHLSPISVQPKDQTNSNVQLFTDQSYNIVNENIIPYGLEKIPRDNSLYVDNTSYADPITYYNNLTQGSPCVNYHPSNQYTLESDHQDRKSNVEFNFHRRTNSKEFVSPAICNQTDMIFERPLVNNEGSYHFNNIVSHPHESSGVFSVSGDRDVSQYKMLHTLSESTLLENNENYKGHMQFPFNVERDKLSSLETSSSLEECSIQPGEINDGREHLALHQKPPTFGMTDSCKRSSETGREKLQHANKSVDWIDEKVGSMPQHLPYIYYQHGACTSSPDLHSSECNASAAPFITSQSTRSIEEQPHGIPLDTIASEFSMRSQNSSMHRQFIVSETKYGHPPPPDSFELRPTNSLIVTESVLPISYPDMVYSSLREVDVPGDDLAYYQNQKEENIVNDKQSHEYIDEFCINKPESTTVVTEQIDYISSGIRSCLQVVSNIDKEDKVEHTSLTKTGVVSVNHESESKLAKADSRNFNRPIGDSETAETESELYGLQIIENGDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRLSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMLHGSLRNVLLKKERVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPSIPKQCDSEWKKLMEECWSPDPEARPSFTEVKNRLRSMSAALQKKRPNVLQTTKKPTPIRVFGQRSIASTFRTLPPNSSRDSESSSRNQSPQKSKPAHLSLSHFLDRKLHKSPPLTQKVPGKSTPFASPLGLRIPTSEEVGSVKQNEEERKGAAANDKVILGMFKHTEEERKNDFVIPLDVDELENSVADDVQQSRKRKNPFEGGHDNQTVQKHVVVLGGESRSKPKMLMETDINGKKQKPYNHYANGHGWWDDDMEGVDNEALGVSEVWEGVGSTTLGGIVDWH 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03885 1410 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 81 1173 - -
Tsu01g03885 1410 Pfam Protein tyrosine and serine/threonine kinase 899 1160 IPR001245 GO:0004672|GO:0006468
Tsu01g03885 1410 CDD STKc_MAP3K-like 903 1160 - -
Tsu01g03885 1410 SMART serkin_6 897 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03885 1410 ProSitePatterns Protein kinases ATP-binding region signature. 903 924 IPR017441 GO:0005524
Tsu01g03885 1410 SMART PB1_new 206 293 IPR000270 GO:0005515
Tsu01g03885 1410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1022 1034 IPR008271 GO:0004672|GO:0006468
Tsu01g03885 1410 Pfam PB1 domain 207 291 IPR000270 GO:0005515
Tsu01g03885 1410 Gene3D Phosphorylase Kinase; domain 1 890 984 - -
Tsu01g03885 1410 MobiDBLite consensus disorder prediction 1169 1222 - -
Tsu01g03885 1410 MobiDBLite consensus disorder prediction 1235 1279 - -
Tsu01g03885 1410 ProSiteProfiles Protein kinase domain profile. 897 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03885 1410 SUPERFAMILY Protein kinase-like (PK-like) 885 1160 IPR011009 -
Tsu01g03885 1410 PANTHER SERINE-THREONINE PROTEIN KINASE 81 1173 - -
Tsu01g03885 1410 Gene3D Transferase(Phosphotransferase) domain 1 985 1214 - -
Tsu01g03885 1410 Gene3D - 210 293 - -
Tsu01g03885 1410 MobiDBLite consensus disorder prediction 1165 1223 - -
Tsu01g03885 1410 PRINTS Tyrosine kinase catalytic domain signature 1131 1153 IPR001245 GO:0004672|GO:0006468
Tsu01g03885 1410 PRINTS Tyrosine kinase catalytic domain signature 979 992 IPR001245 GO:0004672|GO:0006468
Tsu01g03885 1410 PRINTS Tyrosine kinase catalytic domain signature 1087 1109 IPR001245 GO:0004672|GO:0006468
Tsu01g03885 1410 PRINTS Tyrosine kinase catalytic domain signature 1016 1034 IPR001245 GO:0004672|GO:0006468
Tsu01g03885 1410 CDD PB1_UP2 195 291 - -
Tsu01g03885 1410 SUPERFAMILY CAD & PB1 domains 207 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03885 Tsu-Chr1 46592841 46603445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03885 38 323 MAP Kinase Kinase Kinase AT1G16270 40.068 1.04e-39 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Tsu01g03885 PK_Tyr_Ser-Thr 1.1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03885 - - gmx:100810711 1575.84