Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03883 ATGGAGGATTTAATTATTTTCGGTGGCTTTGCTTTCTTCGGCGGTTCTGTTCTTCACATTATTGCCAGAAACCATGAAAGGGAGGCCAGGATTCTTAAATCCGTTACCCGGGTCAATCGGCTGAATGATTTAGCACAACTGTTGGATGCAGAAAGATTACCCTTGGTTGTTACAATTTCTGGCAAAGTTGCTTCTGAAAACCCAATTAACTGCGAGATTACTGGCTTAAAAAGTGTAATAGTTGAAGAAAGAgtAAATAAactttatcttaaaaaaaaggaagaagagaaatgCAAGTGTGCTATTAAGCAAAAAGAGAAATGCAAGCGTGCTACTAAGCCCCAAAAGACATGCAATGATGCTGATTACTGGACACTACATTCTGAGCCCTCTGATTCATGGACATTACATTCTAAGAGTATATCGTGCAATACTAAAGAGGTCCCATGGTATCTGGATGATGGGACTGATCATGTGCATGTGGTTGGAGCTCGTGGTGCCACTGATTTTGGATATACGGCTGTAAGATCAAAATTTGACGAGTCAGGTCAGACACTTGTATGTGGCACATTGGATAGTCTCCGAGATAAAAAGATCCTTGGATTGAAGAGGACTGAACGGGTACTTCCAGTTGGAGCTTTTTTGACTGTTGTTGGTGAGGCCTCTAAAGATGATTACGGGCCCATTCGAATTCGGCGACCTCCCAAAGGGCCATTTTATGTGTCTTGCAAAACAATTGATGAACTCATTGCAAATATTGAGGATTCTTCGAGGTGGTGTACGTATATTTCTGTGGGCCTGACAGCAATTGGTGTCAGTCTAATAGCCGCATGTGCTATTGAAAGTTGGGGTTGA 855 0.407 MEDLIIFGGFAFFGGSVLHIIARNHEREARILKSVTRVNRLNDLAQLLDAERLPLVVTISGKVASENPINCEITGLKSVIVEERVNKLYLKKKEEEKCKCAIKQKEKCKRATKPQKTCNDADYWTLHSEPSDSWTLHSKSISCNTKEVPWYLDDGTDHVHVVGARGATDFGYTAVRSKFDESGQTLVCGTLDSLRDKKILGLKRTERVLPVGAFLTVVGEASKDDYGPIRIRRPPKGPFYVSCKTIDELIANIEDSSRWCTYISVGLTAIGVSLIAACAIESWG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03883 284 Coils Coil 91 111 - -
Tsu01g03883 284 PANTHER - 4 281 IPR044231 GO:0004842|GO:0016567
Tsu01g03883 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 4 281 - -
Tsu01g03883 284 Pfam E3 Ubiquitin ligase 132 273 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03883 Tsu-Chr1 46576333 46578758 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03883 16 282 C3H Transcription Factor Family AT1G63900 44.610 4.62e-73 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03883 K15688 - gmx:100803252 246.514