Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g03881 | ATGAAGCGCAGCCATCGATTCAGTCGTGTGGCTGCAACTGTAGTTTATAATGAATACATAAATGATAGAAACCATGTTCATATGAACTCCACAGAGTGGGCTACACTTACCGAGTTTGTTAAGTATTTGGGTCGAACTGGAAAGTGTAAGGTTGAAGAAACACCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACTCTTTTcaaggagaagatgaagaataagAGAGCCAAGGCAGATTTGGTTATGAGCAAAGTGTTAGAAGATAAGGGGTACTACAAGCAAAAGGGCATTGTGAAAAAAGTGATTGACAAATATGTCGGGGAAATAGAAATGCTAGAAAGCAAGCATGTGCTTAGAGTTGATCAGGAGGAGCTCGAAACTGTGATACCACAGGTTGGGGGCCGTGTGAAAATAGTCAACGGAGCTTATCGTGGATCACTTGCTAGGCTACTCGGGGTCGATACAGATCATTTTTGCGCTAAGGTGCAGATAGAGAAAGGTGCTTATGATGGCAGGGTGCTTAAAGCTGTGGAATATGAGGACATTTGTAAAGTAGCCTAA | 573 | 0.4049 | MKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRAKADLVMSKVLEDKGYYKQKGIVKKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDHFCAKVQIEKGAYDGRVLKAVEYEDICKVA | 190 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g03881 | 190 | Pfam | Domain of Kin17 curved DNA-binding protein | 1 | 85 | IPR019447 | - | |
| Tsu01g03881 | 190 | Gene3D | - | 134 | 190 | IPR014722 | - | |
| Tsu01g03881 | 190 | SMART | Kin17_mid_2 | 1 | 91 | IPR019447 | - | |
| Tsu01g03881 | 190 | Pfam | KN17 SH3-like C-terminal domain | 85 | 125 | IPR041330 | - | |
| Tsu01g03881 | 190 | PANTHER | BNAA05G13760D PROTEIN | 1 | 86 | - | - | |
| Tsu01g03881 | 190 | Gene3D | - | 1 | 81 | IPR038254 | - | |
| Tsu01g03881 | 190 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 1 | 86 | IPR037321 | - | |
| Tsu01g03881 | 190 | CDD | KOW_KIN17 | 136 | 189 | IPR041995 | - | |
| Tsu01g03881 | 190 | Gene3D | - | 84 | 133 | - | - | |
| Tsu01g03881 | 190 | PANTHER | BNAA05G13760D PROTEIN | 94 | 190 | - | - | |
| Tsu01g03881 | 190 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 94 | 190 | IPR037321 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g03881 | Tsu-Chr1 | 46568460 | 46569516 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g03881 | 1 | 85 | C2H2 Transcription Factor Family | AT1G55460 | 87.059 | 1.01e-51 | 169 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu01g03881 | K13102 | - | ath:AT5G51795 | 219.55 |