Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03880 ATGGGTAAAACCATCACCCTTGAGGCGGAGAGTTCTGATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAGCAAAGGCTTATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCAGATTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTGTTGCGGTTAAGAGGTGGTATGCAGATATTCGTTAAGACCTTGACTGGCAAAATTATCACCCTTGAGGTTGAATCCTCAGATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAGCAGTGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAACATCCAGAAGGAATCTACCCTTCATTTGGTTCTTAGATTGAGAGGTGGAATGCAGATTTTTGTCAAGACTTTAACAGGAAAGACTATTTACTTTAGAGGGAAACAACTTGAGGATGGAAGAACCCTTGCTGATTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCATGGGGGTATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTTCGATACTATTGACAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCTGGACCAGCAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAATATCCAGAAGGAATCTACTCTCCACCTGGTTTTGAGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACCCTTACTGGCAATTACCTTGGAGGTGGAAAGCTCTGA 855 0.4327 MGKTITLEAESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKIITLEVESSDTIDNVKAKIQDKEGIPPDQQWLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIYFRGKQLEDGRTLADYNIQKESTLHLVLRLHGGMQIFVKTLTGKTITLEVESFDTIDNVKAKIQDKEGIPLDQQRLIFAGKQLEDGCTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGNYLGGGKL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03880 284 SUPERFAMILY Ubiquitin-like 190 266 IPR029071 -
Tsu01g03880 284 ProSiteProfiles Ubiquitin domain profile. 69 144 IPR000626 GO:0005515
Tsu01g03880 284 ProSiteProfiles Ubiquitin domain profile. 157 190 IPR000626 GO:0005515
Tsu01g03880 284 CDD Ubl_ubiquitin 191 266 - -
Tsu01g03880 284 Pfam Ubiquitin family 71 142 IPR000626 GO:0005515
Tsu01g03880 284 Pfam Ubiquitin family 2 66 IPR000626 GO:0005515
Tsu01g03880 284 Pfam Ubiquitin family 193 264 IPR000626 GO:0005515
Tsu01g03880 284 Pfam Ubiquitin family 157 187 IPR000626 GO:0005515
Tsu01g03880 284 PRINTS Ubiquitin signature 24 44 IPR019956 -
Tsu01g03880 284 PRINTS Ubiquitin signature 45 66 IPR019956 -
Tsu01g03880 284 PRINTS Ubiquitin signature 3 23 IPR019956 -
Tsu01g03880 284 SUPERFAMILY Ubiquitin-like 144 190 IPR029071 -
Tsu01g03880 284 PANTHER UBIQUITIN 2 157 - -
Tsu01g03880 284 PANTHER UBIQUITIN 159 277 - -
Tsu01g03880 284 CDD Ubl_ubiquitin 69 144 - -
Tsu01g03880 284 SMART ubq_7 1 64 IPR000626 GO:0005515
Tsu01g03880 284 SMART ubq_7 191 262 IPR000626 GO:0005515
Tsu01g03880 284 SMART ubq_7 145 186 IPR000626 GO:0005515
Tsu01g03880 284 SMART ubq_7 69 140 IPR000626 GO:0005515
Tsu01g03880 284 ProSitePatterns Ubiquitin domain signature. 19 44 IPR019954 -
Tsu01g03880 284 PANTHER - 2 157 - -
Tsu01g03880 284 PANTHER - 159 277 - -
Tsu01g03880 284 Gene3D - 191 268 - -
Tsu01g03880 284 Gene3D - 69 146 - -
Tsu01g03880 284 Gene3D - 1 68 - -
Tsu01g03880 284 Gene3D - 157 190 - -
Tsu01g03880 284 ProSiteProfiles Ubiquitin domain profile. 1 68 IPR000626 GO:0005515
Tsu01g03880 284 ProSitePatterns Ubiquitin domain signature. 217 242 IPR019954 -
Tsu01g03880 284 ProSiteProfiles Ubiquitin domain profile. 191 266 IPR000626 GO:0005515
Tsu01g03880 284 SUPERFAMILY Ubiquitin-like 2 68 IPR029071 -
Tsu01g03880 284 SUPERFAMILY Ubiquitin-like 68 144 IPR029071 -
Tsu01g03880 284 ProSitePatterns Ubiquitin domain signature. 95 120 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03880 Tsu-Chr1 46566350 46567781 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03880 2 69 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.059 3.45e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03880 - K08770 zju:107434035 504.597