Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03879 ATGCTTGTTATTCTTCACTATTCAGCACAACTGTTGGATGACGAAACAACACCCGTGGCTGTTACAATTTCTGGCGAAGTTGCTTCTGAAAACCCAATTAAGTGCGAGATTACTGATTTAAGTGGTGTAATAGTTGTAGAAACCgtagaGAAACTTTATCTGAAAAATGAGGATGTTACTGTTCGGCAAAAAGAGAAATGCAACTGTGCTGGTAATCACCAAAAGACATGCAATGTTGCCTGGACACTACATTCTCAGTTTATCTCATCCATTCCTAAAGAGGTCCCATGGTATCTGGATGATGGAACTGATCGTGTGTATGTGGTTGGAGCTCGTTTTGCCACTGATTTTGCATATCCTGCTGTAAGATCAAAATTCGACGAGTCGGGTCAGACACTTGTAGATGGTCATTTTCAAGATATAAAGATCCTTGGATTGAAGAGGATTGAGCAGGTACTTCCAGTTGGAACTTCTTTGACTGTTGTTGGTGAGGCCTCCAAAGATGATGACGGGACCATTCGAATTCAGCAACCTCCCAAAGGACCATTTTATGTGTCTCACAAAATGATTGATGAACATATTGCAAATTTTGAGGGTTCTGCGAGGTGGTGTAAGCATATTTCTGTAGGCCTAACAACGATTGGTGCTAGTCTAATAGCCAAAAATGCAATTGGACGTTGA 681 0.4082 MLVILHYSAQLLDDETTPVAVTISGEVASENPIKCEITDLSGVIVVETVEKLYLKNEDVTVRQKEKCNCAGNHQKTCNVAWTLHSQFISSIPKEVPWYLDDGTDRVYVVGARFATDFAYPAVRSKFDESGQTLVDGHFQDIKILGLKRIEQVLPVGTSLTVVGEASKDDDGTIRIQQPPKGPFYVSHKMIDEHIANFEGSARWCKHISVGLTTIGASLIAKNAIGR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03879 226 Pfam E3 Ubiquitin ligase 79 217 IPR022170 GO:0004842|GO:0006996|GO:0016567
Tsu01g03879 226 PANTHER - 9 224 IPR044231 GO:0004842|GO:0016567
Tsu01g03879 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 9 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03879 Tsu-Chr1 46561752 46562945 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03879 9 224 C3H Transcription Factor Family AT1G63900 47.059 4.28e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03879 K15688 - gmx:100803252 220.32