Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03878 ATGAAATCTACAGACCACACTGTATCTGATGATAGCATTGAGAATTTTGATTTCGTTGTAATAGATGGTAGGTTTGTTAGGATTAATTCCATGACCGTGGATGATATTGAGGGTCTTCATTTTGTTAGCGAAAATGACCCTTATAACTTTCATGTAAAGTATGCAAGAATCATTGGTTTCGTTGTTAGGAAACATAATGTGATAAGAAATGCTAGTGGAACGATTGTAACGCGGAAGTTTGTGTGCAACAAGCATGGAGAAAGAAACCCAATACACGTGACGAGGGCCGACAAGTTAAGAGATCATAGACCTATCACCCAGATTAATTGTGATGCCCACCTTCATATACATTATGATGTAGAGAGGTTGAGATGGGTAGTGACTTCTTTTGAAGTGTGCCATAACCATGAGCTAACACCGtctaaatttattcatttattttctgCCTACCGTGGAATGACGGATGCCGACAAAGCTCAAATTGACAGCCTGCATTCAGATTGTATCCAAACATGTCATATAATGGGTCACATGGTGGCAAACAAGGGTGGATATGATGTTGTTGGTTTtacaaaaaaagatttgtatAACTATTTTGGCAAGAAAACCATTGTAGATATTAAAGATGGTGATGTCGTTGCTTCTTTAAGCTATCTACGGGGGAAAGCGGGTTTGGATCCTATGTTGTATGCAAAATATACCATCGATGAGGATGGAAAATTGAAGCGTTTGTTTTGGGCTGATGGACGAAGTCGAAATGACTTTTTGTGGTTTGGCGATATTTTGGCTAAGACACCAACTCTTTCACATGGCAAACTTGATTTTGAAAGGGATGACTATGTAAGTAATCAGCCAAAAATTCCAGCCGAGTGTGAAGAGATTGACGACAAAGCTCTTATACCAAAGCCAATTCGCAAGAATCTAAACGCTCTCTCTTTTCTTCTGCAACAAATCTTCGATTCATCGTTCAAGATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTGGAGATTTCTGATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAGCAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCGGATTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGGCATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCCGATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAGCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATTTTTGTGAAGACTTTAACAGGAAAGACTATTACTTTAGAGGTTGAGAGTTCAGATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGAAGAACCCTAGCAGATTACAACATACAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTCAGATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATCCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTACAACATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGGAATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTAGAGGTTGAGAGTTCAGATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTGCTGATTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCGTGGGGGTATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTCCGACACTATTGACAATGTGAAAGCAAAGATTCAAGATAAAGAGGGTATTCCTCCAGACCAGCAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATACATTGGTGTGGATCAATGTAGAAAAATTATACAATAGTACAACAAAGTTATCGTTGCGTATAAACTATTGTTGA 2364 0.3997 MKSTDHTVSDDSIENFDFVVIDGRFVRINSMTVDDIEGLHFVSENDPYNFHVKYARIIGFVVRKHNVIRNASGTIVTRKFVCNKHGERNPIHVTRADKLRDHRPITQINCDAHLHIHYDVERLRWVVTSFEVCHNHELTPSKFIHLFSAYRGMTDADKAQIDSLHSDCIQTCHIMGHMVANKGGYDVVGFTKKDLYNYFGKKTIVDIKDGDVVASLSYLRGKAGLDPMLYAKYTIDEDGKLKRLFWADGRSRNDFLWFGDILAKTPTLSHGKLDFERDDYVSNQPKIPAECEEIDDKALIPKPIRKNLNALSFLLQQIFDSSFKMQIFVKTLTGKTITLEVEISDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTLVWINVEKLYNSTTKLSLRINYC 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03878 787 CDD Ubl_ubiquitin 401 476 - -
Tsu01g03878 787 ProSitePatterns Ubiquitin domain signature. 427 452 IPR019954 -
Tsu01g03878 787 SUPERFAMILY Ubiquitin-like 552 628 IPR029071 -
Tsu01g03878 787 Gene3D - 705 786 - -
Tsu01g03878 787 PANTHER UBIQUITIN 13 476 682 - -
Tsu01g03878 787 PANTHER UBIQUITIN 13 532 767 - -
Tsu01g03878 787 PANTHER UBIQUITIN 13 315 531 - -
Tsu01g03878 787 SUPERFAMILY Ubiquitin-like 399 476 IPR029071 -
Tsu01g03878 787 CDD Ubl_ubiquitin 553 628 - -
Tsu01g03878 787 PANTHER UBIQUITIN 398 607 - -
Tsu01g03878 787 SMART ubq_7 477 548 IPR000626 GO:0005515
Tsu01g03878 787 SMART ubq_7 553 624 IPR000626 GO:0005515
Tsu01g03878 787 SMART ubq_7 705 771 IPR000626 GO:0005515
Tsu01g03878 787 SMART ubq_7 325 396 IPR000626 GO:0005515
Tsu01g03878 787 SMART ubq_7 629 700 IPR000626 GO:0005515
Tsu01g03878 787 SMART ubq_7 401 472 IPR000626 GO:0005515
Tsu01g03878 787 ProSitePatterns Ubiquitin domain signature. 579 604 IPR019954 -
Tsu01g03878 787 Gene3D - 402 476 - -
Tsu01g03878 787 Gene3D - 553 628 - -
Tsu01g03878 787 Gene3D - 319 401 - -
Tsu01g03878 787 Gene3D - 629 704 - -
Tsu01g03878 787 Gene3D - 477 552 - -
Tsu01g03878 787 ProSitePatterns Ubiquitin domain signature. 731 756 IPR019954 -
Tsu01g03878 787 ProSiteProfiles Ubiquitin domain profile. 477 552 IPR000626 GO:0005515
Tsu01g03878 787 SUPERFAMILY Ubiquitin-like 322 400 IPR029071 -
Tsu01g03878 787 ProSitePatterns Ubiquitin domain signature. 351 376 IPR019954 -
Tsu01g03878 787 ProSiteProfiles Ubiquitin domain profile. 401 476 IPR000626 GO:0005515
Tsu01g03878 787 CDD Ubl_ubiquitin 325 400 - -
Tsu01g03878 787 ProSiteProfiles Ubiquitin domain profile. 629 704 IPR000626 GO:0005515
Tsu01g03878 787 ProSiteProfiles Ubiquitin domain profile. 553 628 IPR000626 GO:0005515
Tsu01g03878 787 PANTHER UBIQUITIN 13 398 607 - -
Tsu01g03878 787 ProSiteProfiles Ubiquitin domain profile. 705 765 IPR000626 GO:0005515
Tsu01g03878 787 CDD Ubl_ubiquitin 477 552 - -
Tsu01g03878 787 PANTHER UBIQUITIN 532 767 - -
Tsu01g03878 787 PANTHER UBIQUITIN 315 531 - -
Tsu01g03878 787 ProSitePatterns Ubiquitin domain signature. 503 528 IPR019954 -
Tsu01g03878 787 CDD Ubl_ubiquitin 629 704 - -
Tsu01g03878 787 SUPERFAMILY Ubiquitin-like 704 764 IPR029071 -
Tsu01g03878 787 SUPERFAMILY Ubiquitin-like 476 552 IPR029071 -
Tsu01g03878 787 PRINTS Ubiquitin signature 411 431 IPR019956 -
Tsu01g03878 787 PRINTS Ubiquitin signature 453 474 IPR019956 -
Tsu01g03878 787 PRINTS Ubiquitin signature 432 452 IPR019956 -
Tsu01g03878 787 Pfam Ubiquitin family 631 702 IPR000626 GO:0005515
Tsu01g03878 787 Pfam Ubiquitin family 403 474 IPR000626 GO:0005515
Tsu01g03878 787 Pfam Ubiquitin family 555 626 IPR000626 GO:0005515
Tsu01g03878 787 Pfam Ubiquitin family 707 764 IPR000626 GO:0005515
Tsu01g03878 787 Pfam Ubiquitin family 479 550 IPR000626 GO:0005515
Tsu01g03878 787 Pfam Ubiquitin family 327 398 IPR000626 GO:0005515
Tsu01g03878 787 Pfam FAR1 DNA-binding domain 49 139 IPR004330 -
Tsu01g03878 787 SUPERFAMILY Ubiquitin-like 628 704 IPR029071 -
Tsu01g03878 787 ProSitePatterns Ubiquitin domain signature. 655 680 IPR019954 -
Tsu01g03878 787 ProSiteProfiles Ubiquitin domain profile. 325 400 IPR000626 GO:0005515
Tsu01g03878 787 PANTHER UBIQUITIN 476 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03878 Tsu-Chr1 46545305 46554128 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03878 705 784 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 82.500 1.14e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu01g03878 FAR1 8e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03878 - K08770 han:110936586 855.899