Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g03878 | ATGAAATCTACAGACCACACTGTATCTGATGATAGCATTGAGAATTTTGATTTCGTTGTAATAGATGGTAGGTTTGTTAGGATTAATTCCATGACCGTGGATGATATTGAGGGTCTTCATTTTGTTAGCGAAAATGACCCTTATAACTTTCATGTAAAGTATGCAAGAATCATTGGTTTCGTTGTTAGGAAACATAATGTGATAAGAAATGCTAGTGGAACGATTGTAACGCGGAAGTTTGTGTGCAACAAGCATGGAGAAAGAAACCCAATACACGTGACGAGGGCCGACAAGTTAAGAGATCATAGACCTATCACCCAGATTAATTGTGATGCCCACCTTCATATACATTATGATGTAGAGAGGTTGAGATGGGTAGTGACTTCTTTTGAAGTGTGCCATAACCATGAGCTAACACCGtctaaatttattcatttattttctgCCTACCGTGGAATGACGGATGCCGACAAAGCTCAAATTGACAGCCTGCATTCAGATTGTATCCAAACATGTCATATAATGGGTCACATGGTGGCAAACAAGGGTGGATATGATGTTGTTGGTTTtacaaaaaaagatttgtatAACTATTTTGGCAAGAAAACCATTGTAGATATTAAAGATGGTGATGTCGTTGCTTCTTTAAGCTATCTACGGGGGAAAGCGGGTTTGGATCCTATGTTGTATGCAAAATATACCATCGATGAGGATGGAAAATTGAAGCGTTTGTTTTGGGCTGATGGACGAAGTCGAAATGACTTTTTGTGGTTTGGCGATATTTTGGCTAAGACACCAACTCTTTCACATGGCAAACTTGATTTTGAAAGGGATGACTATGTAAGTAATCAGCCAAAAATTCCAGCCGAGTGTGAAGAGATTGACGACAAAGCTCTTATACCAAAGCCAATTCGCAAGAATCTAAACGCTCTCTCTTTTCTTCTGCAACAAATCTTCGATTCATCGTTCAAGATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTGGAGATTTCTGATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAGCAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCGGATTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGGCATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCCGATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAGCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATTTTTGTGAAGACTTTAACAGGAAAGACTATTACTTTAGAGGTTGAGAGTTCAGATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGAAGAACCCTAGCAGATTACAACATACAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTCAGATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATCCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTACAACATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGGAATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTAGAGGTTGAGAGTTCAGATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTGCTGATTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCGTGGGGGTATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTCCGACACTATTGACAATGTGAAAGCAAAGATTCAAGATAAAGAGGGTATTCCTCCAGACCAGCAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATACATTGGTGTGGATCAATGTAGAAAAATTATACAATAGTACAACAAAGTTATCGTTGCGTATAAACTATTGTTGA | 2364 | 0.3997 | MKSTDHTVSDDSIENFDFVVIDGRFVRINSMTVDDIEGLHFVSENDPYNFHVKYARIIGFVVRKHNVIRNASGTIVTRKFVCNKHGERNPIHVTRADKLRDHRPITQINCDAHLHIHYDVERLRWVVTSFEVCHNHELTPSKFIHLFSAYRGMTDADKAQIDSLHSDCIQTCHIMGHMVANKGGYDVVGFTKKDLYNYFGKKTIVDIKDGDVVASLSYLRGKAGLDPMLYAKYTIDEDGKLKRLFWADGRSRNDFLWFGDILAKTPTLSHGKLDFERDDYVSNQPKIPAECEEIDDKALIPKPIRKNLNALSFLLQQIFDSSFKMQIFVKTLTGKTITLEVEISDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYTLVWINVEKLYNSTTKLSLRINYC | 787 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g03878 | 787 | CDD | Ubl_ubiquitin | 401 | 476 | - | - | |
| Tsu01g03878 | 787 | ProSitePatterns | Ubiquitin domain signature. | 427 | 452 | IPR019954 | - | |
| Tsu01g03878 | 787 | SUPERFAMILY | Ubiquitin-like | 552 | 628 | IPR029071 | - | |
| Tsu01g03878 | 787 | Gene3D | - | 705 | 786 | - | - | |
| Tsu01g03878 | 787 | PANTHER | UBIQUITIN 13 | 476 | 682 | - | - | |
| Tsu01g03878 | 787 | PANTHER | UBIQUITIN 13 | 532 | 767 | - | - | |
| Tsu01g03878 | 787 | PANTHER | UBIQUITIN 13 | 315 | 531 | - | - | |
| Tsu01g03878 | 787 | SUPERFAMILY | Ubiquitin-like | 399 | 476 | IPR029071 | - | |
| Tsu01g03878 | 787 | CDD | Ubl_ubiquitin | 553 | 628 | - | - | |
| Tsu01g03878 | 787 | PANTHER | UBIQUITIN | 398 | 607 | - | - |
Showing 1 to 10 of 53 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu01g03878 | - | K08770 | han:110936586 | 855.899 |
Showing 1 to 1 of 1 entries