Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03877 ATGCTTGGAATTCTTTACTTTTCAGAACAACTGCTGTATGCAGAAAGATTACCTTTGGTTGTTACAGTTTCTGGCAGAGTTGTTTCTGATACCCCAATTAAGTGCGAGTTGACTGGTTTAAGGGGTGTCGTAGTTGAAGAAAGAGTAGAGCAACATTATCTTCAAAATTATGTTGCTAATGAGCTAATAATGAAAGGCAATGATGATCGATCTTGGATGCAACAGTCTGCGTTAATATTGTCCACACGCAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGGCCGCGTGCTTGTGGTTGGAGCGTGTGCTTCTGGAAATGAGACATTTGTAGATTCTGGTCAGGCGCGTATATGTGGAATTGGAACATCTATCGAAGGTAGTTTAAAGGTGAGACTTATCTTCTTCTACCtgcaaacaacaaaagaaaaattaaagcaATGTGCCACTTATTTTGTGATGAAATCATACTTTCAGGTCCATGGACTCAAGAGAATTGAATGGGCACTTCCGTTTGGAACTTCCTTGACCGTTGTTGGTGAGGCCTCTAGAGATGATGATGGGACCATTCGAATTCAGCGACCAGCCAAAGGGCCATTTTATGTCTCGCATAAAACGATTGATGCACACATTGCAGATTTTGCGAGCGTTGCAAGGTGGTGTAAATGTGCTTCTGTGAGCTTAACAGTTTTTGGTGTTTGGCTAATGACCAAACGCTGTGGAAAAGATTGCATGGAAATTGGTAGCTCCTCCTGA 756 0.4114 MLGILYFSEQLLYAERLPLVVTVSGRVVSDTPIKCELTGLRGVVVEERVEQHYLQNYVANELIMKGNDDRSWMQQSALILSTRKEVPWYLDDGTGRVLVVGACASGNETFVDSGQARICGIGTSIEGSLKVRLIFFYLQTTKEKLKQCATYFVMKSYFQVHGLKRIEWALPFGTSLTVVGEASRDDDGTIRIQRPAKGPFYVSHKTIDAHIADFASVARWCKCASVSLTVFGVWLMTKRCGKDCMEIGSSS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03877 251 Pfam E3 Ubiquitin ligase 69 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Tsu01g03877 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 10 244 - -
Tsu01g03877 251 PANTHER - 10 244 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03877 Tsu-Chr1 46540247 46541827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03877 17 246 C3H Transcription Factor Family AT1G63900 43.038 1.45e-54 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03877 K15688 - gmx:100803252 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03877 01 46540247 46541827 Tsu01g03877 01 46540247 46541827 ECH