Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03876 atgatggcGATGGTTCCTTGGCATGGTATTAGCTGCTGTTTGAGTGCTGCTGCTCTTTATCTTCTCGGTAGAGCCAGTGGCAGGGATGTTGATATGCTTAAATCTGTTAACCGGGTCAATCAGCTTAGGGAGTTAGCACAACTGTTGGATCAGGAAATACTTCCCTTGGTTGTTGCAATTTCTGGAAGAGTTGATTCTGAAACCCCAATTAGCTGCAAGTCCAGTGGTGTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTCAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCGTTAATGTTATCCAGGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGATCACGTGCGTGTAGTTGGAGCTCGGGGTGCCACTGGTTTTGTATTACCCGTTGCAAGCGAGGCATTTGAAGAGTCGGGTCGGACACTTGTACGTGGAACATTGGATTATCTCCAAGGTCTAAAGATGCTGGGAGTTAGGAGAGTTGAACGGGTACTTCCAGTTGGAACTTCCTTGAACGTTGTTGGTGAGGTCGCTAGAGACGATGTCGGAACCATTCGAATTCAGCGACCCTCCAAAGGGCCATTTTATGTATCTCCCAAAACGATTGATGAACTCATTGCAAATCTTGGGAAATGGGCAAGttggTATAAGTGCGCCTCTGTGGGCTTGACAGCGTTGGGTGCTTATATGATAGCTAATCATGCTATTCGATACATCTTAGAAAGACGGCGTCGCAACGAATTGCAGAAAAGGGTTCTCGCTGCAGCTGCTGCTAAGAGATCTGGACAAGATAATGGAGGTGAAGAGGCTGACATTTTATCCGATAGTGCTAAACGGGAAAGCGCAATGCCAAATTTGTGTGTAATATGCCTCGAGCAGGAATATAACTCTGTTTTTGTACCGTGTGGGCATATGTGCTGCTGTACAGCTTGCTCTTCGCACTTGACCAGTTGTCCTCTTTGTCGGAGACAGATAGAGAAGGCAGTAAAAACTTTCCGTCATTGA 1032 0.4516 MMAMVPWHGISCCLSAAALYLLGRASGRDVDMLKSVNRVNQLRELAQLLDQEILPLVVAISGRVDSETPISCKSSGVRGVIVEETAEQHFLKHNDAGSWIQDSALMLSRSKEVPWYLDDGTDHVRVVGARGATGFVLPVASEAFEESGRTLVRGTLDYLQGLKMLGVRRVERVLPVGTSLNVVGEVARDDVGTIRIQRPSKGPFYVSPKTIDELIANLGKWASWYKCASVGLTALGAYMIANHAIRYILERRRRNELQKRVLAAAAAKRSGQDNGGEEADILSDSAKRESAMPNLCVICLEQEYNSVFVPCGHMCCCTACSSHLTSCPLCRRQIEKAVKTFRH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03876 343 Pfam E3 Ubiquitin ligase 88 236 IPR022170 GO:0004842|GO:0006996|GO:0016567
Tsu01g03876 343 ProSiteProfiles Zinc finger RING-type profile. 296 331 IPR001841 -
Tsu01g03876 343 PANTHER - 4 310 IPR044231 GO:0004842|GO:0016567
Tsu01g03876 343 CDD RING-HC_LRSAM1 295 334 - -
Tsu01g03876 343 Pfam Zinc finger, C3HC4 type (RING finger) 294 336 - -
Tsu01g03876 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 342 IPR013083 -
Tsu01g03876 343 SUPERFAMILY RING/U-box 295 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03876 Tsu-Chr1 46533855 46538658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03876 4 275 C3H Transcription Factor Family AT1G63900 68.613 3.00e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03876 K15688 - gmx:100803252 573.548