Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03873 ATGGAAGAAACAGTTGCATCCTGTGATAAAGAGAAGATAAATGAGGGAAACAGAAATTGTAATAATGAGAATTTAGCTGTAACTGTTGCATGTGAAGATGAAGAACCTAGAACTGGAATGACATTTAGTTCTGAAGAAGAAGTTACTAGGTATTATATGAATTATGCGAAAAATGTTGGTTTCGGAGTTGGAAAAATAAGTTCGAAAAACGGAGATGatggaaagaaatattttactttAGCTTGTAATTGTGCGAGAAGGTATGTGAGTACTTCGAAGAATCCTTCGAAGCAATATCTTACTTCGAAAACACAATGTCGGGCTAGGTTGAATGCATGCATGGCTTTAGATGGAACAATTACCGTTTCACGAGTTGTTCTGGAACATAATCATGAACTTGGATTTGCCAAAGGACGGTATTTTAGATTGGACGAGAGTTTGGGGCCTCCTCGTTTAGAGAGGAATTTAGAGCTTAATGATCAAGTTGCGAATAGTGTTGGCAAAAATCTTCAATCTGTGGCTGGTGAAATGAATGGGTTTGAGAATCTTACTCTTGCAGAAAAAGATTGTAGAAACCATGTACCCAAAGTAAGGCGGCTAAGACTTGGGAGAGGAGATGTTGATGCAATTCATAGCTTTTTTCATAGAATGCAAAAGCAAAATAGTCAATTTTATTGCGCAATGGATATGGATGACAAAGGGATTAATATACAGAATTTATTTTGGGCAGATGCAAGGTGTAGGGCTGCATATGAATATTTTGGTGAAGTTATAACTTTTGACACCActtattcaataaataaatatgactTGCCATTGACCCCTTTTGTTGGAGTGAACCATCACGGCCAGTCTATTTTGTTAGGGTGTGCAATATTGTCGAACATGGATACTAAAACTCTTACTTGGTTGTTCACAAGATGGTTAGAATGTATGCATGGACATGCTCCAAATGGCATAATTACTAATGAGGATAGCGCGATGAAAAGTGCAATTCAGGACGTGTTTCCGAAAGCTCGTCATCGATGGTGCTTGTGGCATATAATGAAAAAGCTTCCAGAAATGTTGGGTAAACACTCTTGTTATGAGTCTATCAAAACTCTTTTGTATGGTGTGGTATATGACTCTTTGAGCAAAAGTGACTTCATGGAGAGCTGGGGAAATATGATAGAACATTATAAACTGCATGACAATGAATGGTTAAAAGGGTTATTTGATGAGCGGCATCGTTGGGTTCCTGTGTATGTGAAAGAAACATTTTGGGCTGGAATGTCGACTACACAAAGGAGTGAAAGTATAGACTCATATTTTGATGGGTATGTAAACTCAAAGACAACATTGAAGCTATTTGTTGAACAGTATGACAATGCATTGAATGATAAGATCGAAAAGGAAAGCATGGCTGATTTTGATTCATTTAACACAACAATTACTTGTGCAAGTCATTTTGGCTTTGAGATCCAATTCCAGAAGGCATTTACCAATGCAAAATTCATAGAGTTTCAAGTAGAGGTTTCTTCTATGATGTATTGTAATACTAGCTTTGAGAGATTGGAGGACTCAAATTCAATATTCTCTGTCACTGAAAATAGGAAAGTAAATGAGAAAATTAAGGACGTGGTGTTTAAGGTATCTTTCAATGAAAAAGACTTTAAATTGCGGTGCACATGTTGCTTATTTGAGTTTAAAGGAATTTTATGCAGACACATTCTTTGTGTGCTTAAGCTCATTGGCAAAACAGATTCAGTGCCGCCTTATTATATTTTGCCACGGTGGATGAAGTATGTAAAGCGGAGATATACACTGATTAAACGTGGTTTTGAAGAATTGCAACGTGTTAATATAGCATGTGATGCCTTTTATGAAGTTGCTTCTACAATGATAAATTCTGAAGATGATTTAGTGAAAGTGATGAATTGGATCAAGGACTTGAAAAATGTGTTGACTTGTAAAGAGCCATCCTCTAGAATTGCACATGATCTTAGTTCAATTCCAAACCATGTAACTAGGATGCTTGATCCAACAGGAACTCAAAGCAATGGGTTTCCTCCTTTGAAAAGGAAGACATCTAACATTGATCAAATTttgaagaagaagcttgcaagaaacaaaactcaaaagaacaaccaggaaaacaaaaatgatcAAAGTCAAGAAGAGGGCTTATGTACACCTACTGTTCAAgaaattgatgatgaagaacatCTTGGTGATGTCGGCCAGgTTCTATGTTGTCCTCAAATAATAAATCAGAATGTTTCCTGTTCTGAACTTTTACAGGCACAACACCATATGAATGATCCATCATCATAA 2313 0.3489 MEETVASCDKEKINEGNRNCNNENLAVTVACEDEEPRTGMTFSSEEEVTRYYMNYAKNVGFGVGKISSKNGDDGKKYFTLACNCARRYVSTSKNPSKQYLTSKTQCRARLNACMALDGTITVSRVVLEHNHELGFAKGRYFRLDESLGPPRLERNLELNDQVANSVGKNLQSVAGEMNGFENLTLAEKDCRNHVPKVRRLRLGRGDVDAIHSFFHRMQKQNSQFYCAMDMDDKGINIQNLFWADARCRAAYEYFGEVITFDTTYSINKYDLPLTPFVGVNHHGQSILLGCAILSNMDTKTLTWLFTRWLECMHGHAPNGIITNEDSAMKSAIQDVFPKARHRWCLWHIMKKLPEMLGKHSCYESIKTLLYGVVYDSLSKSDFMESWGNMIEHYKLHDNEWLKGLFDERHRWVPVYVKETFWAGMSTTQRSESIDSYFDGYVNSKTTLKLFVEQYDNALNDKIEKESMADFDSFNTTITCASHFGFEIQFQKAFTNAKFIEFQVEVSSMMYCNTSFERLEDSNSIFSVTENRKVNEKIKDVVFKVSFNEKDFKLRCTCCLFEFKGILCRHILCVLKLIGKTDSVPPYYILPRWMKYVKRRYTLIKRGFEELQRVNIACDAFYEVASTMINSEDDLVKVMNWIKDLKNVLTCKEPSSRIAHDLSSIPNHVTRMLDPTGTQSNGFPPLKRKTSNIDQILKKKLARNKTQKNNQENKNDQSQEEGLCTPTVQEIDDEEHLGDVGQVLCCPQIINQNVSCSELLQAQHHMNDPSS 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03873 770 MobiDBLite consensus disorder prediction 702 721 - -
Tsu01g03873 770 Pfam FAR1 DNA-binding domain 50 133 IPR004330 -
Tsu01g03873 770 SMART 26again6 553 580 IPR006564 GO:0008270
Tsu01g03873 770 Pfam MULE transposase domain 257 351 IPR018289 -
Tsu01g03873 770 ProSiteProfiles Zinc finger SWIM-type profile. 542 578 IPR007527 GO:0008270
Tsu01g03873 770 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 21 619 IPR031052 GO:0006355
Tsu01g03873 770 PANTHER OS03G0843700 PROTEIN 21 619 - -
Tsu01g03873 770 Coils Coil 700 720 - -
Tsu01g03873 770 Pfam SWIM zinc finger 544 574 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03873 Tsu-Chr1 46520221 46523560 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu01g03873 MULE 1.9e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03873 - - cam:101506732 1209.9