Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03862 ATGATTATCAAcaacatcttcatcttcttcttcttaacaACTTTccctctctcttctctctctgcAACATGTCCTCTCAACTTCACCATCCTAACAACCCTCAACCTTAACACCGGCGCCGCCACAATACCACCCTCTTCCTTCACTTCAACACCATGTCAATTCGTTCACCAAGCTCTCCGTTTAGTTCAATCCGATTATCTCCGCCGCACCGACTTTTTCCTCCCTCCTTTAAACTCCTCCATCCCATGCTGGGACTCTTTCCAATCTTACATCAACCAATTTGCTCCAAATTTCAACATTCGTTCATCTTGTGGCTTTCAAACAAATTGGATCTCACAAGGTTGTGTCAACGTTACAACAAGACAACAATTTGAATCAATAGTTCCAAAACCAACAATTCAAAATATGCAATCAATGTGTAATCAATCTATTCAAGATAATTCTCCTTGTGCTCTTTGTACTACTAGTTTATCTGGTTTACCTCCTCTTGGTCAATCTATTGGTAATCTTTCTGATTGTACTGGTTATCCTTCAATCTATGCTGCTGCTTTTTCTAATCAATTTGGACCTTCTGATCCTGGTACTGCTAAGTGTTTATTTGCACTTGATTTCACTTCTGGAGGTGGTTCTGGTAGTAAGAAAAAggttgttattattgttgttgtttgtgttgttactgttttggttttgttgttgattGTTATTGGTTTTTGGGTTTATTGGAAATTTAATGATAAGGCAATTGGGGATGGTAAGGATTATGGTGCTAATATCGGTGAGGCGGGTTCGGTTTCTGGGTTGGATTTGGATCAAAGTACTACTTTGATTAGGTTTAGTATTGATGATATTAAGAAGGCGACGAAGAATTTTCATAGAGATAATATAATTGGGAAAGGTGGTTATGGAAATGTGTATAAAGGTTTGTTGAATGATGGAAGTGAAGTTGCTTTTAAGAGGTTTAAGAATTGTTCTGCTGCTGGTGATTCTAGTTTTACTCATGAGGTTCAAGTTATTGCTAGTATTAGGCATGTCAATCTTGTTGCTTTGAGAGGCTATTGTAGTGCCACGACACGTTTAGAGGGTTATCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCTGGAGGAGTGAAACTTAGTTGGCCGGTTCGTCAGAAGATTGCTCTTGGCACTGCTAGGGGATTGGCTTATCTGCATTATGGTGCTCAACCTGCTATTATTCATAGGGATATTAAAGCAAATAATATACTTTTGGATGATAAGTTTGAAGCTAAGGTTGCTGATTTTGGACTTGCAAAGTTTAATCCGGAGGGAATGACTCATATGAGTACAAGAGTAGCCGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAAAGGAGTGACGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTATTGAGTGGAAGAAAAGCTCTTGAAACGAACGATGATGGACAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGAACGGGAAATGCGTTGGATGTTATTGAAGATGGAATGCCGGAACAAGGTTCAAATCAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGCTTTGTTCTCATCCGCAGTTATATGCTAGGCCAACAATGGATCAAGTTGTTAAAATGATGGAGACTGAGGATGAAGTGCCCACGATACCTGGACGGCCGATTCCTCTTGTTGCTGGGAGGCTTGATATTGAGAGATCTGCTAGCAGTTTTGGCGGCTCTGGTCAGCTCTCTAGTCCAACAGGTTATCAATCGTTCACATTAGAAATGGGAAGCGAACACCATTCTTCTAATCATTCTAGGGATGAAAAAAGCTCCACCTCTAGGATGTTGAGTATGGATTCGGATCAGTGA 1926 0.3806 MIINNIFIFFFLTTFPLSSLSATCPLNFTILTTLNLNTGAATIPPSSFTSTPCQFVHQALRLVQSDYLRRTDFFLPPLNSSIPCWDSFQSYINQFAPNFNIRSSCGFQTNWISQGCVNVTTRQQFESIVPKPTIQNMQSMCNQSIQDNSPCALCTTSLSGLPPLGQSIGNLSDCTGYPSIYAAAFSNQFGPSDPGTAKCLFALDFTSGGGSGSKKKVVIIVVVCVVTVLVLLLIVIGFWVYWKFNDKAIGDGKDYGANIGEAGSVSGLDLDQSTTLIRFSIDDIKKATKNFHRDNIIGKGGYGNVYKGLLNDGSEVAFKRFKNCSAAGDSSFTHEVQVIASIRHVNLVALRGYCSATTRLEGYQRIIVCDLMKNGSLHDHLFGSGGVKLSWPVRQKIALGTARGLAYLHYGAQPAIIHRDIKANNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALETNDDGQPSALTDWAWSLVRTGNALDVIEDGMPEQGSNQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETEDEVPTIPGRPIPLVAGRLDIERSASSFGGSGQLSSPTGYQSFTLEMGSEHHSSNHSRDEKSSTSRMLSMDSDQ 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03862 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Tsu01g03862 641 CDD STKc_IRAK 297 566 - -
Tsu01g03862 641 MobiDBLite consensus disorder prediction 593 617 - -
Tsu01g03862 641 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Tsu01g03862 641 Pfam SPARK 20 160 IPR043891 -
Tsu01g03862 641 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 12 621 - -
Tsu01g03862 641 Gene3D Transferase(Phosphotransferase) domain 1 372 573 - -
Tsu01g03862 641 Gene3D Phosphorylase Kinase; domain 1 264 370 - -
Tsu01g03862 641 PANTHER OS01G0253100 PROTEIN 12 621 IPR045271 GO:0004714|GO:0006468
Tsu01g03862 641 SUPERFAMILY Protein kinase-like (PK-like) 274 575 IPR011009 -
Tsu01g03862 641 MobiDBLite consensus disorder prediction 593 641 - -
Tsu01g03862 641 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03862 641 Pfam Protein kinase domain 291 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03862 641 MobiDBLite consensus disorder prediction 618 633 - -
Tsu01g03862 641 ProSiteProfiles Protein kinase domain profile. 291 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03862 Tsu-Chr1 46415035 46417131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03862 1 612 Receptor kinase-like Gene Family AT2G48010 61.201 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Tsu01g03862 Pkinase 7.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03862 - - gmx:100800760 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03862 01 46415035 46417131 Tsu01g03862 01 46415035 46417131 ECH
Tsu07g03524 07 41456131 41458113 Tsu01g03862 01 46415035 46417131 ECH
Tsu07g03524 07 41456131 41458113 Tsu01g03862 01 46415035 46417131 PCT