Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03861 ATGATGAAGGAAAAAGTGGATTCACCTATTACAGTTCTTGAAGATTATTTTAGAAGTTCAGATTCAGAAACAAGTTCTTCCAAAGAACCTAATTTGGATTCTTCTGAGTCTCATGATGATAATTCAAAACCTTTTTCAAGGTGGcattcattttttcaattgttGAAAACCAGATCAAAGAAACAGTTACCTGCATTGAATCATCCTCTTAATGGACAATTCTCAAGAAGAATGAGTAGAAGCATGAGAGATAATATTCTTCCAAGTTGTCTCACTCTTTCAAATGCAACTTCAACACCTTGTAGATCACCATGGAAAATCTTTTCTCATCATGATATACAAATTGCAACCAATAATTTTAGCCAAGAAAATTTGATTGGAAAAGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGGCGAATAATCGGTTAGTAGCAATCAAACGGTTAACAAGAGGAACTGCTGATGAAATCATAGCAGATTTTTTATCAGAACTTGGTGTAATGGCACATGTTAATCATCCTAATACTGCTAAGCTTGTTGGTTATGGAGTGGATGGAGGAATGTATCTAGTTCTTGAGTTGTCCGAAAAGGGGAGTCTAGCTTCAGTGCTATATGGTTCCAAGGAGAAAGTACCATGGTGTATTAGGCACAAAATTGCATTAGGAACAGCAAAGGGTATATTATATCTTCATGAGGGTTGTCAAAAAAGATTTATCCATAGAGATATAAAAGCTGCCAATATCTTGCTCACAGAAGACTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGCTGCCAGAGAATTGGACTCATCACaatgtttcaaaatttgaaggAACTTTTGGCTACCTTGCTCCTGAATACTTGCTTCATGGCATAGTAGATGAGAAAACAGATGTATTTGCATTTGGTGTATTGCTATTAGAATTAGTCAGTGGAAGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCTTTGTTGAAAAAGAATGATATTATGGAGCTGATAGATCCGTCACTCGACAGGGAATTCGACGTTAGGCAGATGAATCTTATGCTCTTGACAGCTTCTTTATGCATACAACAGTCCTCCATTCGTCGCCCTTCTATGAGACAGGTTGTGCAGCTTCTGAATGGAAACCTTAGTTGCTTCAAGGCCATGAAGAAAACTCGATTGCCATTCTTTCGAAAAGTCTTTCGGGAAGAGCTCCTTGATGATTCTGATTAG 1251 0.3677 MMKEKVDSPITVLEDYFRSSDSETSSSKEPNLDSSESHDDNSKPFSRWHSFFQLLKTRSKKQLPALNHPLNGQFSRRMSRSMRDNILPSCLTLSNATSTPCRSPWKIFSHHDIQIATNNFSQENLIGKGGYAEVYKGCLANNRLVAIKRLTRGTADEIIADFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKVPWCIRHKIALGTAKGILYLHEGCQKRFIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHNVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLDREFDVRQMNLMLLTASLCIQQSSIRRPSMRQVVQLLNGNLSCFKAMKKTRLPFFRKVFREELLDDSD 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03861 416 PANTHER OS08G0249100 PROTEIN 2 414 - -
Tsu01g03861 416 Gene3D Transferase(Phosphotransferase) domain 1 197 399 - -
Tsu01g03861 416 Pfam Protein kinase domain 121 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03861 416 ProSiteProfiles Protein kinase domain profile. 120 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03861 416 Gene3D Phosphorylase Kinase; domain 1 94 194 - -
Tsu01g03861 416 MobiDBLite consensus disorder prediction 14 43 - -
Tsu01g03861 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Tsu01g03861 416 MobiDBLite consensus disorder prediction 15 31 - -
Tsu01g03861 416 PANTHER PROTEIN KINASE FAMILY PROTEIN 2 414 - -
Tsu01g03861 416 ProSitePatterns Protein kinases ATP-binding region signature. 126 148 IPR017441 GO:0005524
Tsu01g03861 416 SUPERFAMILY Protein kinase-like (PK-like) 97 385 IPR011009 -
Tsu01g03861 416 SMART serkin_6 120 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03861 Tsu-Chr1 46400681 46403464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03861 108 387 Receptor kinase-like Gene Family AT1G53420 41.667 5.64e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu01g03861 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03861 - - gmx:100780587 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03861 01 46400681 46403464 Tsu01g03437 01 42396230 42398770 ECH
Tsu01g03861 01 46400681 46403464 Tsu07g04516 07 50066646 50070017 ECH
Tsu01g03861 01 46400681 46403464 Tsu01g03861 01 46400681 46403464 ECH
Tsu08g03679 08 54843566 54870363 Tsu01g03861 01 46400681 46403464 ECH