Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03850 ATGTCTGTTGCAGTTTCTTTAACAACAACAAACCCATCAACTTTTTCTATCAACAAACCATTATCAGTAATTCCACCACTCTCTTCATCATCATACACACTTCATCTCTCAAACATGAATCAACCACCTCTCTCTGATCCTGCTGATGTCATCACCGTTAGAACTTCCATGCTTCCAACCGGTAAAGCCAGCACAGACGATCTCCGCCGTCTGTTCAACAAACCTGGCCCCCACGTTTTCCGCGATGCGGTTATAACCGTCACCTTAGTAGGTCCCACCGTGGCCGAGTACATCATCTCAAATTATGATTCCGTCGAAACTCGGAATCTCTTTTCGAAAGCAATATCTGCTTGTGAGAAATCGCATCTCACGAATTTGCTTAAGCCCGCCGTGGAAAGCGGACAATTGGACTACGTCGCCGAGCTTATCGCCGCCGGTGGAGACGCGAGTTTAACGGATTCAAACGGTCGATCGCTTATTCCTTCGGCAATCAGAACCGGGAAACTCGATGTTCTGAAGCTTCTAGTAGCTTCTGGTAGCAGAATCAACGATTCAGTGGATTTTGTTTTGCACGAAGCCGCAGTTTTAGATCGAATCGATATCGTCAAGTTTCTGTTAGAAATTTTCGCGGACAAATTGGACGTGAATTCGACGAACACCGAATCGAAGACACCGATTCACGTGGCGGCGATGGAAGGTCACGTGAGCGTGATCGAGTTTCTCGTTTCGATCGGAGCAAACCCTAACGCAGTGGATTCTCAAAAGTGGACCCCACTCCATCACGCAGCGTCAAGAAATCAGTTAAAAGCGGTGGAGTTTCTATTAGAAAACTCCGACGTGAAATACGCGAAGGAGTTAAACGGAAAAACCGCGTTTGAATTAGCGGAGGAGCGTAATCACACGCGCTTATTCGGTTTACTCCGTTGGGGAGACGCGCTTTTACGCGCGGCGAGGGTTGACGATGTACACGCGCTAAAGAGGTGTTTAGCAGAAGGAGCGGAAGTGAATAGAAAAGATCAGAATGGGTGGACCCCACTACATTGGGCTTCGTTTAAAGGTAGAATAAAAAGTGTTAAGATTTTGTTGGAACATGGTGCTGAAGTTGATAGTGTTGATGATGCTGGTTATACTCCTTTGCATTGTGCTGCTGAAGCTGGACATTTGCAAGTTGCTTTGGTTTTGATTGCTCATGGTGGTTGTCAAACTAATCTTAAGACTTTTCAACATGTTTCTCCTATTGGTTCTTTTCAAAAACATGTTTCTCAATCTCTTCATTATAGTAAAAAATCTGAGACTATAGCTTGA 1305 0.4513 MSVAVSLTTTNPSTFSINKPLSVIPPLSSSSYTLHLSNMNQPPLSDPADVITVRTSMLPTGKASTDDLRRLFNKPGPHVFRDAVITVTLVGPTVAEYIISNYDSVETRNLFSKAISACEKSHLTNLLKPAVESGQLDYVAELIAAGGDASLTDSNGRSLIPSAIRTGKLDVLKLLVASGSRINDSVDFVLHEAAVLDRIDIVKFLLEIFADKLDVNSTNTESKTPIHVAAMEGHVSVIEFLVSIGANPNAVDSQKWTPLHHAASRNQLKAVEFLLENSDVKYAKELNGKTAFELAEERNHTRLFGLLRWGDALLRAARVDDVHALKRCLAEGAEVNRKDQNGWTPLHWASFKGRIKSVKILLEHGAEVDSVDDAGYTPLHCAAEAGHLQVALVLIAHGGCQTNLKTFQHVSPIGSFQKHVSQSLHYSKKSETIA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03850 434 Gene3D - 92 185 IPR036770 -
Tsu01g03850 434 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 190 405 - -
Tsu01g03850 434 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 121 301 - -
Tsu01g03850 434 ProSiteProfiles Ankyrin repeat region circular profile. 221 252 - -
Tsu01g03850 434 Gene3D - 308 433 IPR036770 -
Tsu01g03850 434 ProSiteProfiles Ankyrin repeat profile. 374 398 IPR002110 GO:0005515
Tsu01g03850 434 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Tsu01g03850 434 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 121 301 - -
Tsu01g03850 434 Pfam Ankyrin repeats (3 copies) 314 405 IPR002110 GO:0005515
Tsu01g03850 434 ProSiteProfiles Ankyrin repeat region circular profile. 341 373 - -
Tsu01g03850 434 Pfam Ankyrin repeats (many copies) 224 275 IPR002110 GO:0005515
Tsu01g03850 434 ProSiteProfiles Major sperm protein (MSP) domain profile. 1 90 IPR000535 -
Tsu01g03850 434 SUPERFAMILY Ankyrin repeat 127 399 IPR036770 -
Tsu01g03850 434 Gene3D - 260 307 IPR036770 -
Tsu01g03850 434 ProSiteProfiles Ankyrin repeat region circular profile. 374 398 - -
Tsu01g03850 434 SMART ANK_2a 374 404 IPR002110 GO:0005515
Tsu01g03850 434 SMART ANK_2a 341 370 IPR002110 GO:0005515
Tsu01g03850 434 SMART ANK_2a 122 151 IPR002110 GO:0005515
Tsu01g03850 434 SMART ANK_2a 185 214 IPR002110 GO:0005515
Tsu01g03850 434 SMART ANK_2a 155 184 IPR002110 GO:0005515
Tsu01g03850 434 SMART ANK_2a 308 337 IPR002110 GO:0005515
Tsu01g03850 434 SMART ANK_2a 254 283 IPR002110 GO:0005515
Tsu01g03850 434 SMART ANK_2a 221 250 IPR002110 GO:0005515
Tsu01g03850 434 Gene3D - 186 259 IPR036770 -
Tsu01g03850 434 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 190 405 - -
Tsu01g03850 434 PRINTS Ankyrin repeat signature 222 237 IPR002110 GO:0005515
Tsu01g03850 434 PRINTS Ankyrin repeat signature 357 371 IPR002110 GO:0005515
Tsu01g03850 434 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Tsu01g03850 434 ProSiteProfiles Ankyrin repeat profile. 341 373 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03850 Tsu-Chr1 46311874 46313178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03850 316 398 Ion Channels AT2G26650 42.169 2.03e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03850 - - vra:106772639 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03850 01 46311874 46313178 Tsu01g03850 01 46311874 46313178 ECH