Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03836 ATGTCTTTTAGGAGTATGATTATGGATAGGAAGGGATTTGAGGTTAAATTTGGGTATGGATTGAGATCAAGGTCACAGTCACACTGTGATGTTAGTGTTACCGATGGTTCTTTGGTGGTTGATGGAATGAAGCAGAGTTGTTGGGCTAATATGCCTCCTGAGCTTTTAAGGGATGTGCTGATGAGAATTGAAGTGTCAGATGATACTTGGCCTGCCCGGAAAAATGTTGTTGCTTGCGGCGGTGTTTGTAGGAGTTGGAGAGAAATTGTGAAGGAAATTGTCAAACCTCCTCAACAATCAAGCAAGTTGACATTCCCTATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTCATTCAGTGCTATATTAAACGAAATCGCAGTAACCAGACATATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACCCACACTGACTATATCATTTCTCTAAACTGCGATGATGTATCAAGAGGGAGTAGCACATATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTTACCGTGTATGATGCACACCCTCCAATCTATGGAGCCAACGTCGTAAAGTCTCGTTCCACCAGGCTTAGTCTCAAACAAGTGTCTCCAAGAGTTCCTGCAGGCAACTATCCCATTGTGCATGTCTCATATGATCTGAATGTTTTAGGCTCTAGGGGCCCAAGGATAATGCAATGTGTTATGGATGCGATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCGATTTCTTCATAGCAGAATTGATACTTCTCCATCTATCCCATTCTTCAGATCAAAATCAACGCGCTCAGAGAATCTCCAATCGGTAGTACCTTTGACTGGTCAAAATGATGGAATGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAACGGACGTGTGACAGTTGCTTCAGTTAAGAATTTCCAGCTGGTTGCATCTCCCAAAAATGGTGTTTCTGAACAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACTATGGATTACCAGTATCCAATCTCCGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACTAAGATTGCTTGTGAATGA 1203 0.4347 MSFRSMIMDRKGFEVKFGYGLRSRSQSHCDVSVTDGSLVVDGMKQSCWANMPPELLRDVLMRIEVSDDTWPARKNVVACGGVCRSWREIVKEIVKPPQQSSKLTFPISLKQPGPRDSLIQCYIKRNRSNQTYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGANVVKSRSTRLSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTRFLHSRIDTSPSIPFFRSKSTRSENLQSVVPLTGQNDGMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03836 400 PANTHER TUBBY-RELATED 1 399 - -
Tsu01g03836 400 Pfam Tub family 109 395 IPR000007 -
Tsu01g03836 400 SUPERFAMILY F-box domain 43 92 IPR036047 GO:0005515
Tsu01g03836 400 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Tsu01g03836 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Tsu01g03836 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Tsu01g03836 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Tsu01g03836 400 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Tsu01g03836 400 PRINTS Tubby superfamily signature 227 254 IPR000007 -
Tsu01g03836 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Tsu01g03836 400 SUPERFAMILY Tubby C-terminal domain-like 97 400 IPR025659 -
Tsu01g03836 400 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 399 - -
Tsu01g03836 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Tsu01g03836 400 Gene3D Tubby Protein; Chain A 105 400 IPR025659 -
Tsu01g03836 400 Pfam F-box domain 48 94 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03836 Tsu-Chr1 46181227 46184480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03836 1 400 TUB Transcription Factor Family AT2G47900 75.000 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g03836 Tub 2.5e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03836 K19600 - gmx:100809257 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03836 01 46181227 46184480 Tsu01g03836 01 46181227 46184480 ECH