Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03834 ATGTTACCTGTCTTTTGGTCTATATGCCGCCGTGTCTTGTTTCATCTCTTTACTTTAAATTTCCTAAACAATTCGGCCTCTGCCTTAGGAAATGAGACTGACTATTCTGCATTACTCGTATTCAAAAAATCAATAACGAATGACCCTTTTGGAGTATTAAACTCTTGGAATAGTTCTAGCCACTTTTGCAAGTGGCGTGGAGTAACTTGCGGTCGAAAACATCAAAGAGTCACAGAGATAAAGTTGACAGGATACCAGCTGCGAGGTTCTATATCACCTCACGTTGGTAATCTTTCCTTTCTGAGGATTCTCTACCTTGATAATAATCGCTTCCATGATAATATCCCGCGAGAATTAGGCCTTTTATTTCGACTGCATGCCATCTCTTTGGAAAATAATACTTTAGGAGGTCAATTTCCAATCAGTTTGACAAATTGCTCTCAATTGAGGGAGATTGGATTAGATGGGAATCATTTTATTGGCCAAATACCAATGGAGATTCACTCTCTTGCCAAGCTTCATTTTTTCAGTGTTGCAAAAAACAATCTAACAGGTCGGATTCCACCTTCTATTTGGAATCTTTCTTCCCTCACTGCTCTTTCTTTTGCTTATAACTACTTGGAGGGAAACATACCGGAAGAAATAGGCCTTTTAAAAAACTTGACACAGATGTCAGTGTCACAAAACAGATTATCTGGTACACTTCCCTTATCACTTTACAATATGTCATCCCTCACTGACCTCTACACAGCAGGCAATCAATTCCATGGTTCTCTTCCAACCAACATGTTCACAACACTCCCAAATCTTAGGCAATTTCTGTTTGGTTCGAATCAATACTCAGGTCCAATCCCAATGTCCATCAGTAATGCATCTCAGATGCAATTGTTTGATATTGGCGAAAACAATTTTGTAGGACAAATTCCAAATCTTAGAAAGCTACAAGATCTCTTTATTTTGGCTGTAGACGGAAATAATCTTGGCAGCAATTCATCATCTAGTGGTGATGACTGGGAGTTTATAAAATCTTTAGTAAACTGTAGTCAACTTGATATAGTATTTGTTGGAAATAATAGCTTTGGAGGTCCTTTGCCCAAAATTATTGGCAATTTGTCCAAACATCTCTCACAACTTGATATGTCTGAGAATCAGATATCTGGAAAAATTCCACCAGAACTGGGAAATCTTGTTAACTTGATTTACTTGTCCATAGAGGACAACCTCTTAACTGATGTTATTCCAGAGAGTTTTGCTAAGTTACATAAAATGCAAGGATTGTTTTTGAATATGAACAAACTGTCGGGTGAAATTTCGGCGGTTATTTTAGGAAATCTCAGTCAATTATCTCTGTTGGGTTTGTCATACAATTTTTTGATAGGAAAGATTCCTTCAACTATTGGAAATTGCAAAAAGTTGCAAGGAGTAGACTTCTCAATGAACAACCTTAGTGGAGCTATACCAACACAACTTCTTGGCCTTTCCTCCTTATCAATACTACTCAACCTATCAGATAACTCATTAAGTGGTAATTTGCCTCCTGAGGTGGGCTTGCTTCAAAACATTGGAAGTCTTGATATATCTGAAAATCATCTCTCTGGTGGCATTCCTACAAAAATTAGAGATTGCTTAAGCTTAGAGTACCTTTTTTTAGAGGGAAATTCTTTAGATGGAAACATACCATCTTCTTTATCTTCACTAAAAGGTCTTCTACAACTAGACCTGTCGCGTAACAACTTGTCTGGTTCAATTCCACAAGAATTACAAAATATTTCTGCATTAGAATGGTTCAATGCTTCTTTTAATAAGTTGGAGGGTGAGGTGCCCTTGCGTGGCATTTTCCAGAATGCTAGTAGAGTTTCATTGACTGGGAATGACAGGCTTTGTGGCGGAGTAGCAAAGCTGAATCTGCGACTTTGCCCGCCAAAAGATGTGAAAAAGAGAAAACACCACACCCACCGCAAGTTGATCATAATCATCTTCTCAGTTGCATTTCTTCTTCTACTGTCATTTGTCATTACTTTCATCATCTATAAGATAATGAGGAAAAGGCAGAGAAAAGCAACCACTGATTCAACAATTGAGCAACTTCCAAAGGTATCATACCAAGAACTACACCATGCCACTGATGGATTCTCGGTTGAGAACTTGATAGGAACCGGAGGTGTAGGTTTTGTGTACAAAGGAAGACTTAATTCAGAAGAAAGAGTTGTTGCTATAAAGGTTCTAAACCTTCAGAAGAAAGGAGCTCATAAAAGCTTCATTGCCGAATGTAATGCTTTTAGAAATATCAGGCATAGAAATCTAGTCAAGATTATCACATGTTGCTCGAGTGTGGATTACAAAGGTAATGACTTTAAAGCAATAGTTTATGAATACATGACAAATGGAAGCTTAGAGGAATGGTTGCATCAAAATGCAGAACTACAACGAaaattgaaattggatgaaAGATTTGAGATTGTTATTGGAATTGCTTCTGCATTACACTATATTCACTATGAATGTGAGAAGCCAATTGTTCATTGTGATTTAAAACCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCTTAGCCAGACTTGTTTCAGCAATTGATGGTAACTCCAGTAACCAAACCAGCTCTATGGGAATAAAGGGGACTATAGGTTATACTCCTCCagAGTACGGAATGGATTCTCAATTGTCAACAGAAGGCGACATGTACAGCTTTGGGATTCTTCTTTTGGAGATGTTAACTGGGAGAGGACCAACTGATGAAATGTTTAAAGATGGGCACAACCTCCATAACTATGTAAAAATTGCATTTCCAAATAGCATTTTGGAGGTTGTTGATGTAACTCTACTCTCAATGGAAAATGACCATCTTGCAGTAACAACCGAGGTTGCAAGTGATTTGCATCCTAATGTTGAGAGGTGCTTATCTTCTTTATTTAAGATTGGATTATGTTGTTCAGTGGAGGCTCCAAGAGAACGAATTAATATCAAGGAAGTCATCACAGAACTCAATATAATTTCAAAAGCTTTACCTGATGAAGGAATTAAAGACCCTTCATCACCAAGTGTTTCTACATCCAGGATACACAAAAATTGA 3111 0.3751 MLPVFWSICRRVLFHLFTLNFLNNSASALGNETDYSALLVFKKSITNDPFGVLNSWNSSSHFCKWRGVTCGRKHQRVTEIKLTGYQLRGSISPHVGNLSFLRILYLDNNRFHDNIPRELGLLFRLHAISLENNTLGGQFPISLTNCSQLREIGLDGNHFIGQIPMEIHSLAKLHFFSVAKNNLTGRIPPSIWNLSSLTALSFAYNYLEGNIPEEIGLLKNLTQMSVSQNRLSGTLPLSLYNMSSLTDLYTAGNQFHGSLPTNMFTTLPNLRQFLFGSNQYSGPIPMSISNASQMQLFDIGENNFVGQIPNLRKLQDLFILAVDGNNLGSNSSSSGDDWEFIKSLVNCSQLDIVFVGNNSFGGPLPKIIGNLSKHLSQLDMSENQISGKIPPELGNLVNLIYLSIEDNLLTDVIPESFAKLHKMQGLFLNMNKLSGEISAVILGNLSQLSLLGLSYNFLIGKIPSTIGNCKKLQGVDFSMNNLSGAIPTQLLGLSSLSILLNLSDNSLSGNLPPEVGLLQNIGSLDISENHLSGGIPTKIRDCLSLEYLFLEGNSLDGNIPSSLSSLKGLLQLDLSRNNLSGSIPQELQNISALEWFNASFNKLEGEVPLRGIFQNASRVSLTGNDRLCGGVAKLNLRLCPPKDVKKRKHHTHRKLIIIIFSVAFLLLLSFVITFIIYKIMRKRQRKATTDSTIEQLPKVSYQELHHATDGFSVENLIGTGGVGFVYKGRLNSEERVVAIKVLNLQKKGAHKSFIAECNAFRNIRHRNLVKIITCCSSVDYKGNDFKAIVYEYMTNGSLEEWLHQNAELQRKLKLDERFEIVIGIASALHYIHYECEKPIVHCDLKPSNVLLDDDMVAHVSDFGLARLVSAIDGNSSNQTSSMGIKGTIGYTPPEYGMDSQLSTEGDMYSFGILLLEMLTGRGPTDEMFKDGHNLHNYVKIAFPNSILEVVDVTLLSMENDHLAVTTEVASDLHPNVERCLSSLFKIGLCCSVEAPRERINIKEVITELNIISKALPDEGIKDPSSPSVSTSRIHKN 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03834 1036 SUPERFAMILY L domain-like 345 629 - -
Tsu01g03834 1036 SMART LRR_typ_2 98 122 IPR003591 -
Tsu01g03834 1036 SMART LRR_typ_2 242 266 IPR003591 -
Tsu01g03834 1036 SMART LRR_typ_2 396 419 IPR003591 -
Tsu01g03834 1036 SMART LRR_typ_2 194 218 IPR003591 -
Tsu01g03834 1036 SMART LRR_typ_2 445 469 IPR003591 -
Tsu01g03834 1036 SMART LRR_typ_2 566 589 IPR003591 -
Tsu01g03834 1036 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Tsu01g03834 1036 PANTHER OS04G0122200 PROTEIN 20 1014 - -
Tsu01g03834 1036 Gene3D Ribonuclease Inhibitor 334 638 IPR032675 -
Tsu01g03834 1036 ProSiteProfiles Protein kinase domain profile. 711 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03834 1036 Gene3D Transferase(Phosphotransferase) domain 1 793 1021 - -
Tsu01g03834 1036 Pfam Leucine rich repeat 544 603 IPR001611 GO:0005515
Tsu01g03834 1036 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Tsu01g03834 1036 PANTHER LRR RECEPTOR-LIKE KINASE 20 1014 - -
Tsu01g03834 1036 Pfam Protein kinase domain 712 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03834 1036 SUPERFAMILY L domain-like 31 327 - -
Tsu01g03834 1036 SUPERFAMILY Protein kinase-like (PK-like) 690 1008 IPR011009 -
Tsu01g03834 1036 Gene3D Phosphorylase Kinase; domain 1 673 792 - -
Tsu01g03834 1036 SMART serkin_6 711 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03834 1036 Gene3D Ribonuclease Inhibitor 189 333 IPR032675 -
Tsu01g03834 1036 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03834 Tsu-Chr1 46130371 46135967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03834 31 1008 Receptor kinase-like Gene Family AT3G47570 45.262 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu01g03834 Pkinase 6.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03834 - - mtr:MTR_1g088940 1599.33