Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu01g03828 | ATGGACTTGTACGGTCGGAGCCCCACTAGAAACGGATCAAACCCGTTAAATCAACATGAATGGCGTTCACCTACCGCCGACACAACCGCTCTTGGagAGTCTATGTGGCATTTAACTATTGGTGGTGGTGAATCTTACCCTGAAAGACATGGTGTGCCTAATTGTGCTTATTATATGCGAACTGGGTTCTGTGGTTATGGTGGAAGGTGTCGATTCAATCATCCGCGTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACGGGGGACTACCCAGAAAGGCTCGGGGAACCTCCATGTCAGTATTATTTAAAAACCGGAACCTGTAAATTTGGCGCGTCCTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGTGAGAATGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTTCACCATCCTCAACCTGCTGGCACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACTGTTCCTCTGCCTGAACAGTTTGGAGGAGCTTCCCCAAGCTTGAGAGTGGCTAGACCTCCTGTGTTACCTGGTTCGTATGTACAAGGTGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCTTTTCCTGGATGGAGTCCTTATTCGGCTCCTGTAAGTCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCTACTTCTCTATACGGAGTGACCCAGTTGTCGTCATCAACATCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTTCTCCTGGCCCAGCAGGAAGCAGCCTGCAGGAAAAAGTATTTCCTGAAAGACCTGGTGAACCGGTCTGTCAATACTATCTGAGAACTGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCGCAGGATCAGGGTGTTGCACGACCACTTCTTAGTCCCATTGGTCTTCCGTTACGCCCGGTATGA | 1032 | 0.4845 | MDLYGRSPTRNGSNPLNQHEWRSPTADTTALGESMWHLTIGGGESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGENECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQFGGASPSLRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPAGSSLQEKVFPERPGEPVCQYYLRTGDCKFGLACRYHHPQDQGVARPLLSPIGLPLRPV | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu01g03828 | 343 | SUPERFAMILY | CCCH zinc finger | 52 | 78 | IPR036855 | GO:0046872 | |
Tsu01g03828 | 343 | SMART | c3hfinal6 | 297 | 324 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | SMART | c3hfinal6 | 94 | 121 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | SMART | c3hfinal6 | 140 | 167 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | SMART | c3hfinal6 | 49 | 76 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | SUPERFAMILY | CCCH zinc finger | 300 | 325 | IPR036855 | GO:0046872 | |
Tsu01g03828 | 343 | Gene3D | - | 37 | 89 | - | - | |
Tsu01g03828 | 343 | Gene3D | - | 91 | 177 | - | - | |
Tsu01g03828 | 343 | ProSiteProfiles | Zinc finger C3H1-type profile. | 94 | 122 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | PANTHER | PROTEIN PHOSPHATASE RELATED | 1 | 342 | - | - | |
Tsu01g03828 | 343 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 | 1 | 342 | - | - | |
Tsu01g03828 | 343 | SUPERFAMILY | CCCH zinc finger | 143 | 168 | IPR036855 | GO:0046872 | |
Tsu01g03828 | 343 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Tsu01g03828 | 343 | Gene3D | - | 289 | 333 | - | - | |
Tsu01g03828 | 343 | ProSiteProfiles | Zinc finger C3H1-type profile. | 297 | 325 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | ProSiteProfiles | Zinc finger C3H1-type profile. | 49 | 77 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | ProSiteProfiles | Zinc finger C3H1-type profile. | 140 | 168 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | SUPERFAMILY | CCCH zinc finger | 97 | 122 | IPR036855 | GO:0046872 | |
Tsu01g03828 | 343 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 96 | 121 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 142 | 167 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 299 | 324 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 52 | 76 | IPR000571 | GO:0046872 | |
Tsu01g03828 | 343 | MobiDBLite | consensus disorder prediction | 7 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu01g03828 | Tsu-Chr1 | 46070043 | 46073045 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu01g03828 | 19 | 342 | C2H2 Transcription Factor Family | AT5G18550 | 51.170 | 6.27e-110 | 326 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Tsu01g03828 | zf-CCCH | 2.5e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu01g03828 | - | - | gmx:100805017 | 633.639 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu01g03828 | 01 | 46070043 | 46073045 | Tsu01g03828 | 01 | 46070043 | 46073045 | ECH |