Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03826 ATGGGTGATAACAACAAAGGCAAAGTCATCTCAAACAACATAGAAGAAGCCTTTAAGTACAATAACAACAATTTCACATCTCATCAAGATCATGAAGTAATCAAAGAGCAAGATCGTTTACTTCCAATAGCTAATGTTGGAAGAATCATGAAACAAATCTTGCCACCAAATGCAAAAATCTCCAAAGAAGCTAAAGAAACCATGCAAGAGTGTGTTTCTGAGTTTGTTAGCTTTGTAACTGGTGAAGCATCTGACAAGTGTCACAAGGAGAAGAGGAAGACAGTGAATGGTGATGATGTTTGTTGGGCCATGACAAATCTAGGGTTTGATGATTACTCTGAGCCACTCAAAAGGTATTTGTATAAGTATAGAGAATTAGATGTGGAAAGAGGAAACCAAAATAAGggtaacaataataatagtgATGAAATTGAAACATATAATTATGATGATGATAAGTCACAAACTCAAGCAACTAATATTAGGAACAGTGGACCTAAGTCTAGGGGATTTTGA 516 0.343 MGDNNKGKVISNNIEEAFKYNNNNFTSHQDHEVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWAMTNLGFDDYSEPLKRYLYKYRELDVERGNQNKGNNNNSDEIETYNYDDDKSQTQATNIRNSGPKSRGF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03826 171 MobiDBLite consensus disorder prediction 151 171 - -
Tsu01g03826 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Tsu01g03826 171 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Tsu01g03826 171 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Tsu01g03826 171 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Tsu01g03826 171 Gene3D Histone, subunit A 27 164 IPR009072 GO:0046982
Tsu01g03826 171 MobiDBLite consensus disorder prediction 130 171 - -
Tsu01g03826 171 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 18 159 - -
Tsu01g03826 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu01g03826 171 SUPERFAMILY Histone-fold 37 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03826 Tsu-Chr1 46048386 46048901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03826 33 134 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.412 7.34e-60 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu01g03826 CBFD_NFYB_HMF 5.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03826 K08065 - gmx:100817274 219.55