Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03822 ATGGAAATTCCTAACCTTAGTTtggaatataaaattttatgccGTGTTATTAATGTTCAATTAAAGGCACATGTTAACACAGATGAGATTTTCGCTCTAGTTACATTAATTCCGTTGGAGGAACAAGAGTTTATGGTAGAGGACAATCATCCATTTGATGATAGTGAAGTGTActcttttaaaaagatattgACTTCGAATGAAGCAAGTACACATGCTACTGGACTTTACATTCCAAAGGAACATGCAGATAGATGCTTTCCTCCTTTGGACATGACTGTTCAACCACCAATGCAAGATCTTGTGGTGAAGGACTTACATGGAATTGAGTGGAATTTTCGACATATTTATTGTGATCATCAAAAAGCACACGTGCTAACCTGTGGTTGGAGCACGTTCGTAAATTCTAAAAAACTTGTTTCTGGAGATTCATGCATTTTCGTCAGAGGAGAGAATGGTGAAATTGGTATTGGGATTCATCGAGCAACGAGACAATATAGTGAAATGTGGAAAACATCATCTCCACTTGGAGCAATGTATGTTGCTTCCCATGCTGTTTCTGCAAGAACCATGTTCCATGTCCAGTACTACCCTTGGATTACTCCCTTTGAGTTTATGATCCCTCTAAAAACTTATGTCGATTCCATTGAAAGAGACTATTTCATTGGAATGAGGGTACACAAGTTGTTGTCGGCAGTTGAACAATCTGGAAGAAGATATGGTACAATTGTTGGTAATGAAGATATTGATCCCATTAGGTGGCCTGGTTCTGAATGGAGATGTATCAAGGTGAAATGGGATTCAACACCAAATACTTTTACACAACATGAAAGCGTATGTCCTTGGTGGATTGAGCCTTTGGAATCTCCCAAGGGTTTTCCTATTCTCCCTTTACCAAATGAggTTATTGGGAGTTCATCCACATATCACACCGTGGACGTGGACATGGACATGCAAGGTCAACAACATGGCAATGCTAGAAATGATGCAAATccaattttcttcatttttgctTTCTTTATATTACTTTGCTTTTTCATATTTGTGATTTTTGCCTTTCGTCCTATTTTGTAA 1074 0.3641 MEIPNLSLEYKILCRVINVQLKAHVNTDEIFALVTLIPLEEQEFMVEDNHPFDDSEVYSFKKILTSNEASTHATGLYIPKEHADRCFPPLDMTVQPPMQDLVVKDLHGIEWNFRHIYCDHQKAHVLTCGWSTFVNSKKLVSGDSCIFVRGENGEIGIGIHRATRQYSEMWKTSSPLGAMYVASHAVSARTMFHVQYYPWITPFEFMIPLKTYVDSIERDYFIGMRVHKLLSAVEQSGRRYGTIVGNEDIDPIRWPGSEWRCIKVKWDSTPNTFTQHESVCPWWIEPLESPKGFPILPLPNEVIGSSSTYHTVDVDMDMQGQQHGNARNDANPIFFIFAFFILLCFFIFVIFAFRPIL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03822 357 Pfam Auxin response factor 182 263 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu01g03822 357 SUPERFAMILY DNA-binding pseudobarrel domain 53 167 IPR015300 -
Tsu01g03822 357 Gene3D - 57 163 IPR015300 -
Tsu01g03822 357 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 289 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu01g03822 357 Pfam B3 DNA binding domain 60 162 IPR003340 GO:0003677
Tsu01g03822 357 PANTHER AUXIN RESPONSE FACTOR 3 289 - -
Tsu01g03822 357 CDD B3_DNA 59 161 IPR003340 GO:0003677
Tsu01g03822 357 SMART B3_2 60 163 IPR003340 GO:0003677
Tsu01g03822 357 ProSiteProfiles B3 DNA-binding domain profile. 61 163 IPR003340 GO:0003677
Tsu01g03822 357 Gene3D - 220 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03822 Tsu-Chr1 46026223 46029799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03822 1 299 B3 DNA Binding Superfamily AT5G62000 44.660 3.62e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu01g03822 B3 7.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03822 - - mtr:MTR_8g446900 447.203