Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03818 atggtTGAAACTAGAAGCAGTTCTTCTTCCAAACGTGCTCTTTCTTCTCCTTCATCATCTCCTTCAAACACAAAACGATCCAAGGTTTCAGGTGATGTTTCATCTGCTTCTAATCCTTCACCACCGGTCAACGAATCTGGAAAAAGAGATATACAGCCATCTGATCTGCATCAAACGGAGAAGACTGTTGATGGTGATAACAACAAGTCTTCTGAGGCTTTGGTGTCTTCACCTCAGTGTTTAGAATCAAGTGAAATTGAGGAGAAATCAAGGGCGTTACCACCACTAGCTCGGTCGAAGAAACGTTGCACGAAATCGAATTCTAAGGCTGCTTGGGGGAAGCTTATTTCTCAATCATCTGAGAATCCTCACCTGTCCATGTGCGATGATATCTACACTGTTGGTCAAGGTGGTCACTGTAATTTATGGCTTAAAGATCCCACTATTAGTAATGTTTTGTGTAAATTGAGCCACATAGAGTATGGAGGTTCGTCTGTTGCGTTGCTGGAAATCATCGGGAGTAAAGGTGCTGTTAAAGTCAACGGAAAGACGTGTGGGAATAAATCCCGCCTTATTTTAAGCGGAGGTGATGAGGTCGTCTTCGGTGTGTCTGGCAAGCAGGCTTATATCTTTCAGCAGCTCAATAATAATATCACTACTCCCAACATACCTTCTCCTGTGAGTATTTTAGAAGCCCAGGGTGCTTCAATAACTGGAACGCAAGTTGATGCAAGATCTGGTGACCTGTCGACTGTTGCTGGAGATTCAATATTGGCCTCTTTTTCAAATCTTAATGAAGATTTATCTACCATTCCTCCTTCTGTTAGCACTGGCGCGAACATGCAGCAGAAGACTGACGTTTCACCACTACCTGCCGGCAATGGGGATGATAAGGCAAGTGTTGATATGAAGCACAACATCATCAATAACGGACCGGATGGAGTTTCTTCTGCCGAGAAAACTGGCTGTCCGTCCTCTGCCACCATTGATGAAGATCCTAAGGATGACACTGTAGAAGTCAATGCCAGTGTGGATGCAGATGTTGGGAAGATGACTGCTGCTACTTGGAAATTGAGACCATTATTGCACAAGCTTTCTGGATCATGTCCTGAAATTGATTTGAGTGGCAACATTGCCAAGATATTGGAAGAACGCAAGGGATTAAAGGAACTCCTTAAAGATGTCAGTACCTCAACAATACTGGCTTCGCCCAAGCAACAAGCTTTGAAAGAGAGCTTACAGATGAGAATTCTCAATGCTGAGAATATTGATGTTTCATTTGAAAATTTCCCATATTATCTAAGTGATACAACAAAGAATGTTTTGATCGCTTCTGCATACATTCATTTGAAGTGCAATGCCTCCGGGAAATATGTTTCAGACCTTCCGTCGTTGTCCCCGCGGATTTTGTTATCTGGTCCTGCAGGCTCTGAAATATATCAGGAGACTCTCTCCAAGGCACTTGCAAAGCATTTTGGTGCTTGGCTACTAATTGTGGATTCTCTTTCACCTCCCGGTCGAACACCATTAAAGGAAGTTGATTCTACTAATGAAAGTTTAAGGCCTGAAAGACCATCTGTTTTTACCAAGAGAAGTACTCCAGCTGCTACAATACATATAAAGTCTAAGAAACCGGCTTCTAGTGTTGATGCTCAAATTATAGGTGGATCCGCATCAAGTTCACAGTTTATACTAAAGCAAGAAGTTTCTACGGCATCGTCAAAAGGTGGTACTCTTAAAACAGGTGATCGGGTAAGATATGTTGGTGATTTCCCTTCAGCTGTCTCATCaccacaagttttcccttcaagCAGGGGACCAAGTTATGGATGCCGGGGCAAagttctccttgcttttgaaaATAACGGGTCTTCAAAAATTGGAGTTAGATTTGAGAAATCAATTCCAGATGGAAATGATCTTGGAGGCCTTTGCGAAGATGACCGTGGCTTCTTTTGTTCCGCCAATCATTTGGTACTGGTAGATGGTGTTGGAGGGGATGATTCTGGCAAAGCTGCGATTAATGAAATCTTTGAGGTTGCCTCTAATCTGAGTAAAACTGGCGCACTAGTGTTGTTGATTAAAGATATAGAGAAGGGTGTAGCTGGGAACTCAGAAGTTTTGAAAAGTAAATTCGGAAGCTTGCCGCAAAATGTTGTAGTAATTGGTTCACATATCCAACCAGACAGTCGTAAGGAGAAGACCCAACCTGGCAGCCTTCTGTTTACAAAATTTGGAGGCAACCAGACAGCACTACTCGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAACTCAACAGGCTCTTCCCAAACAAAGTTACAATACAGTTACCTCAGGATGAGACTTTACTTTCTGATTGGAAGCAGCACCTAGATCGTGACATAGAAACTATGAAAGCTCAGTCCAATGTTGTCAGCATTCGCTTAGTCCTCAACAGGTTTGGACTGGATTGCCCTGACCTTGAGACTCTTTCCATCAAAGATCAAACTCTGACAACTGAAAATGTGGAGAAGATTATTGGTTGGGCTATTAGTTACCATTTTATGCATTCATCTGAAACTTCTACCGACGAATCAAAGCCTGTGATATCTGCAGAGAGTATTCACTATGGCTTCAACATTCTACAGGGCATTCAAAATGAGAACAGGAGCTTAAAAAAGTCACTGAAGGACGTAGTTACTGAGAATGAATTTGAGAAAAAACTACTTGGTGATGTTATTCCACCAACTGATATTGGGGTTTCATTTGATGATATTGGAGCTTTAGAAAATGTAAAGGAAACCTTAAAGGAATTGGTTATGCTTCCGCTTCAAAGGCCTGAATTATTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATATTGCTTTTTGGCCCCCCTGGCACGGGGAAAACAATGCTTGCAAAGGCCGTAGCAACTGAAGCAGGAGCAAATTTTATTAACATCTCCATGTCTAGCATTACTTCGAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTAGCCAGCAAAATTGCCCCAAgtgttatttttgttgatgagGTTGATAGCATGTTAGGGAGACGTGAAAATCCTGGTGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTACGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAATAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGGAGattGATGGTGAATTTGCCAGATGCAGCAAATAGAGCAAAAATTATGAGAGTCATTTTAGCAAAAGAAGAATTAGCGGCTGATGTTGATTTAGAAGCATTAGCAAATATGACTGATGGATACTCTGGAAGTGACCTAAagAATCTTTGTGTCACAGCAGCACACTGTCCAATACGAGAGATCTTGGAGAAGGAAAAGAAGGATAAAAGCTCTGCATTGGCTGAGAACAAACCTCTACCTGGGTTATGTAGCAGTGCCGACATTCGTCCCTTAAAGATGGAAGATTTTAGATATGCACACGAGCAGGTTTGCGCAAGCGTGTCATCGGATTCAAATAATATGAATGAATTAGTCCAATGGAATGACCTCTATGGTGAAGGTGGATCAAGAAAAAAGACATCTTTGAGCTATTTCATGTAA 3699 0.4115 MVETRSSSSSKRALSSPSSSPSNTKRSKVSGDVSSASNPSPPVNESGKRDIQPSDLHQTEKTVDGDNNKSSEALVSSPQCLESSEIEEKSRALPPLARSKKRCTKSNSKAAWGKLISQSSENPHLSMCDDIYTVGQGGHCNLWLKDPTISNVLCKLSHIEYGGSSVALLEIIGSKGAVKVNGKTCGNKSRLILSGGDEVVFGVSGKQAYIFQQLNNNITTPNIPSPVSILEAQGASITGTQVDARSGDLSTVAGDSILASFSNLNEDLSTIPPSVSTGANMQQKTDVSPLPAGNGDDKASVDMKHNIINNGPDGVSSAEKTGCPSSATIDEDPKDDTVEVNASVDADVGKMTAATWKLRPLLHKLSGSCPEIDLSGNIAKILEERKGLKELLKDVSTSTILASPKQQALKESLQMRILNAENIDVSFENFPYYLSDTTKNVLIASAYIHLKCNASGKYVSDLPSLSPRILLSGPAGSEIYQETLSKALAKHFGAWLLIVDSLSPPGRTPLKEVDSTNESLRPERPSVFTKRSTPAATIHIKSKKPASSVDAQIIGGSASSSQFILKQEVSTASSKGGTLKTGDRVRYVGDFPSAVSSPQVFPSSRGPSYGCRGKVLLAFENNGSSKIGVRFEKSIPDGNDLGGLCEDDRGFFCSANHLVLVDGVGGDDSGKAAINEIFEVASNLSKTGALVLLIKDIEKGVAGNSEVLKSKFGSLPQNVVVIGSHIQPDSRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDETLLSDWKQHLDRDIETMKAQSNVVSIRLVLNRFGLDCPDLETLSIKDQTLTTENVEKIIGWAISYHFMHSSETSTDESKPVISAESIHYGFNILQGIQNENRSLKKSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKETLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAANRAKIMRVILAKEELAADVDLEALANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKDKSSALAENKPLPGLCSSADIRPLKMEDFRYAHEQVCASVSSDSNNMNELVQWNDLYGEGGSRKKTSLSYFM 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03818 1232 MobiDBLite consensus disorder prediction 310 324 - -
Tsu01g03818 1232 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 49 1232 - -
Tsu01g03818 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 927 1203 IPR027417 -
Tsu01g03818 1232 Pfam ATPase family associated with various cellular activities (AAA) 968 1097 IPR003959 GO:0005524|GO:0016887
Tsu01g03818 1232 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 49 1232 - -
Tsu01g03818 1232 MobiDBLite consensus disorder prediction 50 67 - -
Tsu01g03818 1232 Pfam FHA domain 132 202 IPR000253 GO:0005515
Tsu01g03818 1232 MobiDBLite consensus disorder prediction 1 47 - -
Tsu01g03818 1232 CDD FHA 129 203 IPR000253 GO:0005515
Tsu01g03818 1232 ProSiteProfiles S4 RNA-binding domain profile. 174 214 - -
Tsu01g03818 1232 SMART AAA_5 964 1101 IPR003593 -
Tsu01g03818 1232 MobiDBLite consensus disorder prediction 1 101 - -
Tsu01g03818 1232 MobiDBLite consensus disorder prediction 507 534 - -
Tsu01g03818 1232 Gene3D - 111 220 - -
Tsu01g03818 1232 Pfam AAA+ lid domain 1121 1157 IPR041569 -
Tsu01g03818 1232 ProSitePatterns AAA-protein family signature. 1071 1090 IPR003960 GO:0005524|GO:0016887
Tsu01g03818 1232 MobiDBLite consensus disorder prediction 68 83 - -
Tsu01g03818 1232 Coils Coil 888 908 - -
Tsu01g03818 1232 CDD AAA 966 1099 - -
Tsu01g03818 1232 Gene3D - 926 1204 IPR027417 -
Tsu01g03818 1232 Gene3D - 1100 1194 - -
Tsu01g03818 1232 SUPERFAMILY SMAD/FHA domain 112 206 IPR008984 GO:0005515
Tsu01g03818 1232 MobiDBLite consensus disorder prediction 309 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03818 Tsu-Chr1 45944442 45955948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03818 963 1168 Calmodulin-binding Proteins AT3G56690 35.885 1.44e-31 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03818 - - gmx:100801477 1746.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03818 01 45944442 45955948 Tsu01g03818 01 45944442 45955948 ECH